Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1933 277 2e-69 seq1567 120 4e-22 seq1057 86.0 8e-12 >seq1933 Length=42650 Score = 277 bits (306), Expect = 2e-69 Identities = 1106/1714 (65%), Gaps = 38/1714 (2%) Strand=Plus/Plus Query 117805 TGAACTGAAT-GGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGC 117863 |||||||||| ||| || ||| |||| | |||||||||||||| || |||||||| Sbjct 25289 TGAACTGAATCGGGGCT-GCCGCCGCCTGGGTGCGGAGGTAGTACATGCCAGTCTTGAGA 25347 Query 117864 CCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGG----AGAGGGTTGGACTTTC 117919 ||| ||||||| | | ||||| | | |||| ||| |||| || Sbjct 25348 CCCAGCTTCCATCCGGTGAAGTGCATGCTCGTGATCTTGCCCATAGAAGGTTC-ACG--- 25403 Query 117920 CATGAAGAGGTTCATACTTTGGGATTGATCGATGAA-GCGTCCCCGATCCGCCGCCATAT 117978 |||| || ||||| || || || |||||||| ||| || || || || ||||| | Sbjct 25404 CATGTGGATGTTCAGGGACTGAGACTGGTCGATGAAAGCG-CCACGGTCGGCGGCCATCT 25462 Query 117979 CAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTG 118038 | | | || | ||| ||||| || ||| |||||||| ||| |||||||| | Sbjct 25463 GGACGATGGTCCTCTGCGAGATCTCCCAGACGGTCTTGTAGAGGGCCTTGATATCATCCG 25522 Query 118039 GGATATCCACGA-TATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCC 118097 |||| | ||| | || ||||| || ||| || | || ||| | | ||||| ||| Sbjct 25523 GGATG-CTGCGAATGTTCTGGATAGAACCATCCTCGGCGATGATGCGGTTCTTCAGGTCC 25581 Query 118098 TTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAA 118155 | ||||| |||||| || || |||| | || ||| | |||| || | Sbjct 25582 TCGGACCACAGACCACACTGCACAAGGTCCTTGAGCAGCCATGGGT--TGACCACCTGGA 25639 Query 118156 ACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCAT 118215 ||||||| ||||| || | | | ||||| |||| |||||| |||||||||||||| | Sbjct 25640 ACTCACCAGCGAGCACACGCCGCTGGTAGATGTTGGACGTGTAGGGCTCAAAGCACTCGT 25699 Query 118216 TGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTAC 118275 |||| |||| ||| || | || ||||| |||||||| || ||||| | | |||||| | Sbjct 25700 TGTTGCCCAGGATCTGCGAGGTCGAGGCAGTGGGCATAGGCGCCATCAACAAGCTGTTGC 25759 Query 118276 GGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCT 118335 ||| || | | | | || |||| || ||||||||||| || | | | || Sbjct 25760 GGACGCCATGCTGCTTGATCTTGGCCTTCAGGGCGTCCCAGTCCCAGAGGTCCGAGGGCT 25819 Query 118336 ---CCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATG 118392 | | |||||| || |||| |||||||| || || | || |||||||| | | Sbjct 25820 TGACGTTGTCCCACATGTCGTACTGAAGGATACCCTGAGAAACGGGAGATCCCTCGTACG 25879 Query 118393 TCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACA 118452 | || || || || |||| || | ||| | || |||||| ||||| || | Sbjct 25880 ACAAGTAGGGACCGTCCACCTTGGCAATGTCGCACGATGCGGTGAGGGCGGCGTGGTAGA 25939 Query 118453 TTGTTTCAAAAATGCGAGCATTCA-TTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGG 118511 | || ||||| || | |||| || | |||||| || || || | || ||| Sbjct 25940 TGGTCTCAAAGATCTGCTTGTTCAGCTGAC-GGGCCTCAGGCGACTCGAAGGGCAGGCGG 25998 Query 118512 CACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 118571 | || |||| || ||||| || || || | ||| || ||||| || | ||| Sbjct 25999 AGAGCCAAGAAGGCATCAGCCAGACCCTGAACGCCCACGCCGATAGGGCGGTGGCGCATG 26058 Query 118572 TTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 118631 || || ||||| || || ||||| | || |||||| | | | || || || Sbjct 26059 TTGCTGTTGCGAGCCTCCTGGACAGGATAGTAGTTGATATCGACGATCTTGTTCAGGTTG 26118 Query 118632 TTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA 118691 | |||||| | |||| ||| || ||| | | | | | | | |||| | Sbjct 26119 CGGACGACAACTTGGGTGACTTCGTGCAGCAGCTGGAAGTTGTAGCAGTCGTTCTCATAG 26178 Query 118692 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 118751 | ||| ||| ||| |||||||| |||||||| || || |||| ||| || || Sbjct 26179 TCGACGAACTGAGGCAGGGCGATGGACGCCAGGTTGCAGACAGCAACCTCGTCAGGGGCA 26238 Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811 | |||||| || || |||||||| | ||| || || |||||||||| |||||| || Sbjct 26239 GAGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGG 26298 Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 || ||| ||| |||||||| |||||| |||| | || ||||| || || Sbjct 26299 TTGCTCTTGCGGTTGGCGTGGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGC 26358 Query 118872 GACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTC 118930 | || ||| || || | ||| | | || | || || || | | | || ||||| Sbjct 26359 GCCTCGAGGATGGCATACCACAGCTTCTG-TGCCTTCAAGGTCTTCTGGCCGCGACCCTC 26417 Query 118931 TTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGG 118990 ||| ||||| ||| | ||| || ||||| || || | || | || || || Sbjct 26418 GCGCTCATACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCGGG 26477 Query 118991 TGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAG 119050 || | ||||| | || | ||| | || || ||| || |||||||||||||| Sbjct 26478 ACACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAAGAG 26537 Query 119051 GTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATT 119110 || ||||||||||| ||| |||||| || ||| || | ||||| | || || || Sbjct 26538 ATCAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCGTGGTT 26597 Query 119111 GAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGAT 119170 |||| || | || || | || ||| ||||||||||| |||||||| | || | Sbjct 26598 CTTGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATGGCAAA 26657 Query 119171 TG-AC-----CCCTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATAC 119224 | || | ||| | | ||| |||||| || || | |||||| ||| || || Sbjct 26658 GGCACCGGGGCGCTT--GTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGAC 26714 Query 119225 ACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATT 119284 ||| ||||| || ||||| |||| || ||| || || || |||| || | | Sbjct 26715 ACGCAGCATGGGGATGATGCCATTAGACGTGCCGTTGGTGCCGGCAATATAGGAGCCAGT 26774 Query 119285 GGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA 119344 ||| | || ||||| | | |||||| || || ||| ||| ||||| || || Sbjct 26775 GGCACGGATGCGGTGGACATTGAGACCAATGCCTCCGGCCATCTTGGAGATCATGGCACA 26834 Query 119345 CTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCA 119404 | |||| || | ||||| || ||||| || |||| | | | |||||||| Sbjct 26835 GGTCTTGAGGGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCCACTAGGAAGCA 26894 Query 119405 GCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGA 119463 |||| || ||||| || || || |||||||| ||||| || | ||||| ||| Sbjct 26895 CGATGACAGCTG-TGCCTGAGGCGTGCCGGCGTTGAATAGAGTCGGCGAAGCGTGTGTGA 26953 Query 119464 ACATACCT-TGGGACATCTTGTCGTAGGTCTCCA 119496 | | || | | ||| | | || ||||||||||| Sbjct 26954 AGA-ACTTGTTGGAGAGGTAGTTGTAGGTCTCCA 26986 >seq1567 Length=91444 Score = 120 bits (132), Expect = 4e-22 Identities = 292/440 (66%), Gaps = 2/440 (0%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| ||||| ||||||||||||||||| ||||| ||| | | | ||| |||||||| Sbjct 45591 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 45532 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || ||||| || || | | | || | | | | ||||||||| Sbjct 45531 AAGTCGAAGGGGTTGGAAGACTTGTAGACCTTCTCGTTGCCGAGGGCGAC-GAGGAGACG 45473 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | |||| |||||||||||| |||| || |||||| |||| ||| ||| Sbjct 45472 GTCGGCGACGAACTCAATGTACTGCTTCATCAGGGTGGCGTTCATGCCGAGCAGGCCACA 45413 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || | |||| ||||||||||| | || || ||| | ||| || | Sbjct 45412 GGGCAGGGCCTCAGTCAGGAACTCCTTCTCAATGACAACGGCATCCGTGATGATAGCCTC 45353 Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCCTG 130026 | | || | ||| || | ||| || ||| || ||| || || Sbjct 45352 TACGCGCTGCTTGCTGGGCCGGTTGTTCAGGTGGGAGAACAGCAGGCAGGCGAAGTCAGT 45293 Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 || |||||||||||||| ||||| || || || |||||| |||||| ||||| || || Sbjct 45292 ATGTAGACCCTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATCAGGCC 45233 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || | || | ||| ||||||||| ||||| || Sbjct 45232 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCGCCGCTGAAGAAGATACCCTCGACGGC 45173 Query 130147 CGCGAACGCAAAGAGACGCT 130166 ||||| || | || |||| Sbjct 45172 AGCGAATGCGACAAGGCGCT 45153 >seq1057 Length=53502 Score = 86.0 bits (94), Expect = 8e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 14242 GGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGAT 14301 ||| ||||| || || ||||| ||||| || || || | ||||| |||||| Sbjct 21602 GGCATCAATCTCGTCAATGAAGACGATGCAGGGCGCGTTCTTCCGGGCCTGCGCAAAGAG 21661 Query 14302 ATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG-GAAC 14360 || ||||||||| |||||||||||| ||||||||||| || || | || | || || Sbjct 21662 GTCGCGCACTCTCGAGGCACCGACACCGACAAACATCTCGACGAATTCGGAGCCGCTGAC 21721 Query 14361 ATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 14420 | | || ||| || ||| || ||||| ||| | || |||||| || ||||| || | Sbjct 21722 ACT-GAAGAACGGCACGCCCGACTCACCGGCGGTCGCCTTGGCGAGCAGCGTCTTACCAG 21780 Query 14421 TCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 | || || || | | | ||| ||||| || ||| |||| || Sbjct 21781 TACCGGGCGGGCCAGACAAGATGGCGCCACGCGGAATCTTGGCGCC 21826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618417280840080