Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq1933 277 2e-69
seq1567 120 4e-22
seq1057 86.0 8e-12
>seq1933
Length=42650
Score = 277 bits (306), Expect = 2e-69
Identities = 1106/1714 (65%), Gaps = 38/1714 (2%)
Strand=Plus/Plus
Query 117805 TGAACTGAAT-GGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGC 117863
|||||||||| ||| || ||| |||| | |||||||||||||| || ||||||||
Sbjct 25289 TGAACTGAATCGGGGCT-GCCGCCGCCTGGGTGCGGAGGTAGTACATGCCAGTCTTGAGA 25347
Query 117864 CCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGG----AGAGGGTTGGACTTTC 117919
||| ||||||| | | ||||| | | |||| ||| |||| ||
Sbjct 25348 CCCAGCTTCCATCCGGTGAAGTGCATGCTCGTGATCTTGCCCATAGAAGGTTC-ACG--- 25403
Query 117920 CATGAAGAGGTTCATACTTTGGGATTGATCGATGAA-GCGTCCCCGATCCGCCGCCATAT 117978
|||| || ||||| || || || |||||||| ||| || || || || ||||| |
Sbjct 25404 CATGTGGATGTTCAGGGACTGAGACTGGTCGATGAAAGCG-CCACGGTCGGCGGCCATCT 25462
Query 117979 CAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTG 118038
| | | || | ||| ||||| || ||| |||||||| ||| |||||||| |
Sbjct 25463 GGACGATGGTCCTCTGCGAGATCTCCCAGACGGTCTTGTAGAGGGCCTTGATATCATCCG 25522
Query 118039 GGATATCCACGA-TATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCC 118097
|||| | ||| | || ||||| || ||| || | || ||| | | ||||| |||
Sbjct 25523 GGATG-CTGCGAATGTTCTGGATAGAACCATCCTCGGCGATGATGCGGTTCTTCAGGTCC 25581
Query 118098 TTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAA 118155
| ||||| |||||| || || |||| | || ||| | |||| || |
Sbjct 25582 TCGGACCACAGACCACACTGCACAAGGTCCTTGAGCAGCCATGGGT--TGACCACCTGGA 25639
Query 118156 ACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCAT 118215
||||||| ||||| || | | | ||||| |||| |||||| |||||||||||||| |
Sbjct 25640 ACTCACCAGCGAGCACACGCCGCTGGTAGATGTTGGACGTGTAGGGCTCAAAGCACTCGT 25699
Query 118216 TGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTAC 118275
|||| |||| ||| || | || ||||| |||||||| || ||||| | | |||||| |
Sbjct 25700 TGTTGCCCAGGATCTGCGAGGTCGAGGCAGTGGGCATAGGCGCCATCAACAAGCTGTTGC 25759
Query 118276 GGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCT 118335
||| || | | | | || |||| || ||||||||||| || | | | ||
Sbjct 25760 GGACGCCATGCTGCTTGATCTTGGCCTTCAGGGCGTCCCAGTCCCAGAGGTCCGAGGGCT 25819
Query 118336 ---CCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATG 118392
| | |||||| || |||| |||||||| || || | || |||||||| | |
Sbjct 25820 TGACGTTGTCCCACATGTCGTACTGAAGGATACCCTGAGAAACGGGAGATCCCTCGTACG 25879
Query 118393 TCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACA 118452
| || || || || |||| || | ||| | || |||||| ||||| || |
Sbjct 25880 ACAAGTAGGGACCGTCCACCTTGGCAATGTCGCACGATGCGGTGAGGGCGGCGTGGTAGA 25939
Query 118453 TTGTTTCAAAAATGCGAGCATTCA-TTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGG 118511
| || ||||| || | |||| || | |||||| || || || | || |||
Sbjct 25940 TGGTCTCAAAGATCTGCTTGTTCAGCTGAC-GGGCCTCAGGCGACTCGAAGGGCAGGCGG 25998
Query 118512 CACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 118571
| || |||| || ||||| || || || | ||| || ||||| || | |||
Sbjct 25999 AGAGCCAAGAAGGCATCAGCCAGACCCTGAACGCCCACGCCGATAGGGCGGTGGCGCATG 26058
Query 118572 TTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 118631
|| || ||||| || || ||||| | || |||||| | | | || || ||
Sbjct 26059 TTGCTGTTGCGAGCCTCCTGGACAGGATAGTAGTTGATATCGACGATCTTGTTCAGGTTG 26118
Query 118632 TTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA 118691
| |||||| | |||| ||| || ||| | | | | | | | |||| |
Sbjct 26119 CGGACGACAACTTGGGTGACTTCGTGCAGCAGCTGGAAGTTGTAGCAGTCGTTCTCATAG 26178
Query 118692 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 118751
| ||| ||| ||| |||||||| |||||||| || || |||| ||| || ||
Sbjct 26179 TCGACGAACTGAGGCAGGGCGATGGACGCCAGGTTGCAGACAGCAACCTCGTCAGGGGCA 26238
Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811
| |||||| || || |||||||| | ||| || || |||||||||| |||||| ||
Sbjct 26239 GAGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGG 26298
Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871
|| ||| ||| |||||||| |||||| |||| | || ||||| || ||
Sbjct 26299 TTGCTCTTGCGGTTGGCGTGGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGC 26358
Query 118872 GACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTC 118930
| || ||| || || | ||| | | || | || || || | | | || |||||
Sbjct 26359 GCCTCGAGGATGGCATACCACAGCTTCTG-TGCCTTCAAGGTCTTCTGGCCGCGACCCTC 26417
Query 118931 TTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGG 118990
||| ||||| ||| | ||| || ||||| || || | || | || || ||
Sbjct 26418 GCGCTCATACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCGGG 26477
Query 118991 TGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAG 119050
|| | ||||| | || | ||| | || || ||| || ||||||||||||||
Sbjct 26478 ACACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAAGAG 26537
Query 119051 GTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATT 119110
|| ||||||||||| ||| |||||| || ||| || | ||||| | || || ||
Sbjct 26538 ATCAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCGTGGTT 26597
Query 119111 GAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGAT 119170
|||| || | || || | || ||| ||||||||||| |||||||| | || |
Sbjct 26598 CTTGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATGGCAAA 26657
Query 119171 TG-AC-----CCCTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATAC 119224
| || | ||| | | ||| |||||| || || | |||||| ||| || ||
Sbjct 26658 GGCACCGGGGCGCTT--GTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGAC 26714
Query 119225 ACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATT 119284
||| ||||| || ||||| |||| || ||| || || || |||| || | |
Sbjct 26715 ACGCAGCATGGGGATGATGCCATTAGACGTGCCGTTGGTGCCGGCAATATAGGAGCCAGT 26774
Query 119285 GGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA 119344
||| | || ||||| | | |||||| || || ||| ||| ||||| || ||
Sbjct 26775 GGCACGGATGCGGTGGACATTGAGACCAATGCCTCCGGCCATCTTGGAGATCATGGCACA 26834
Query 119345 CTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCA 119404
| |||| || | ||||| || ||||| || |||| | | | ||||||||
Sbjct 26835 GGTCTTGAGGGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCCACTAGGAAGCA 26894
Query 119405 GCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGA 119463
|||| || ||||| || || || |||||||| ||||| || | ||||| |||
Sbjct 26895 CGATGACAGCTG-TGCCTGAGGCGTGCCGGCGTTGAATAGAGTCGGCGAAGCGTGTGTGA 26953
Query 119464 ACATACCT-TGGGACATCTTGTCGTAGGTCTCCA 119496
| | || | | ||| | | || |||||||||||
Sbjct 26954 AGA-ACTTGTTGGAGAGGTAGTTGTAGGTCTCCA 26986
>seq1567
Length=91444
Score = 120 bits (132), Expect = 4e-22
Identities = 292/440 (66%), Gaps = 2/440 (0%)
Strand=Plus/Minus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| ||||| ||||||||||||||||| ||||| ||| | | | ||| ||||||||
Sbjct 45591 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 45532
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846
|| || || ||||| || || | | | || | | | | |||||||||
Sbjct 45531 AAGTCGAAGGGGTTGGAAGACTTGTAGACCTTCTCGTTGCCGAGGGCGAC-GAGGAGACG 45473
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
|| | |||| |||||||||||| |||| || |||||| |||| ||| |||
Sbjct 45472 GTCGGCGACGAACTCAATGTACTGCTTCATCAGGGTGGCGTTCATGCCGAGCAGGCCACA 45413
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
|| || || || | |||| ||||||||||| | || || ||| | ||| || |
Sbjct 45412 GGGCAGGGCCTCAGTCAGGAACTCCTTCTCAATGACAACGGCATCCGTGATGATAGCCTC 45353
Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCCTG 130026
| | || | ||| || | ||| || ||| || ||| || ||
Sbjct 45352 TACGCGCTGCTTGCTGGGCCGGTTGTTCAGGTGGGAGAACAGCAGGCAGGCGAAGTCAGT 45293
Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086
|| |||||||||||||| ||||| || || || |||||| |||||| ||||| || ||
Sbjct 45292 ATGTAGACCCTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATCAGGCC 45233
Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146
|||||||| | |||||| || | || | ||| ||||||||| ||||| ||
Sbjct 45232 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCGCCGCTGAAGAAGATACCCTCGACGGC 45173
Query 130147 CGCGAACGCAAAGAGACGCT 130166
||||| || | || ||||
Sbjct 45172 AGCGAATGCGACAAGGCGCT 45153
>seq1057
Length=53502
Score = 86.0 bits (94), Expect = 8e-12
Identities = 156/226 (69%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 14242 GGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGAT 14301
||| ||||| || || ||||| ||||| || || || | ||||| ||||||
Sbjct 21602 GGCATCAATCTCGTCAATGAAGACGATGCAGGGCGCGTTCTTCCGGGCCTGCGCAAAGAG 21661
Query 14302 ATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG-GAAC 14360
|| ||||||||| |||||||||||| ||||||||||| || || | || | || ||
Sbjct 21662 GTCGCGCACTCTCGAGGCACCGACACCGACAAACATCTCGACGAATTCGGAGCCGCTGAC 21721
Query 14361 ATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 14420
| | || ||| || ||| || ||||| ||| | || |||||| || ||||| || |
Sbjct 21722 ACT-GAAGAACGGCACGCCCGACTCACCGGCGGTCGCCTTGGCGAGCAGCGTCTTACCAG 21780
Query 14421 TCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466
| || || || | | | ||| ||||| || ||| |||| ||
Sbjct 21781 TACCGGGCGGGCCAGACAAGATGGCGCCACGCGGAATCTTGGCGCC 21826
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618417280840080
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