Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq1933 212 7e-50
seq1567 111 2e-19
seq1057 98.7 1e-15
>seq1933
Length=42650
Score = 212 bits (234), Expect = 7e-50
Identities = 1126/1774 (63%), Gaps = 36/1774 (2%)
Strand=Plus/Minus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|||||| ||||| | ||||| || ||| | || || || || |||| || ||
Sbjct 27047 CCACAGCACATGCTGATGCGTGTCGCCGTTGGCATCTGGGGAGACAACATCGAGAGGGTT 26988
Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340
||||||| ||| || | | ||| | | || | |||| ||||| | || || || ||
Sbjct 26987 CTGGAGACCTACAACTACCTCTCCAACAAGT-TCTTCACACACGCTTCGCCGACTCTATT 26929
Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400
||| || || || || | || |||| |||||||| | | || ||||||||
Sbjct 26928 CAACGCCGGCACGCCTCAGGCACAGCTGTCATCGTGCTTCCTAGTGGACATGAAGGAGGA 26869
Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460
||| | |||||||||| || || | | ||||| ||||| ||| ||| ||
Sbjct 26868 TAGCATCGAGGGTATCTATGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCCGG 26809
Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520
|| ||||| | | |||| | | |||| | || |||| || || ||
Sbjct 26808 AGGCATTGGTCTCAATGTCCACCGCATCCGTGCCACTGGCTCCTATATTGCCGGCACCAA 26749
Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580
|| || |||| || || || ||||| || || || ||| ||| || ||||| ||
Sbjct 26748 CGGCACGTCTAATGGCATCATCCCCATGCTGCGTGTCTTCAACAACACTGCTCGCTACGT 26689
Query 104581 AAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCACG 104636
| || | ||| | | | | || | | || |||| || ||||| |||||||
Sbjct 26688 CGACCAGGGTGG-CAACAAGCGCCCCGGTGCCTTTGCCATCTACCTGGAGCCGTGGCACG 26630
Query 104637 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC- 104695
| ||| || | |||||||| || |||| ||||| || | || |||| || |||
Sbjct 26629 CTGATGTCTTCGAGTTCCTCGACCTGCGCAAGAACCACGGAAAGGAAGAGGTCCG-TGCT 26571
Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755
|| || |||||| || |||||||| || ||||||||||||||| | || ||| |||
Sbjct 26570 CGTGACCTCTTCCTGGCCCTCTGGATCCCTGATCTCTTCATGAAGCGTGTGGAGAAGAAC 26511
Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAG 104815
||| | ||| | || | || || || || || || || |||| | || |||
Sbjct 26510 GGCGACTGGACCCTTATGTGCCCCAACGAGTGTCCCGGCCTGGCCGACTGCTACGGCGAG 26451
Query 104816 GAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC-GACGGTGCC 104874
||||| || ||| | ||| ||||| ||| || ||||| | | | | ||| ||
Sbjct 26450 GAGTTCGAGGCCTTGTACGAGAAGTATGAGCGCGAGGGTCGCG-GCCAGAAGACCTTGAA 26392
Query 104875 AGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACA 104933
|| | || | ||||| | || || ||| || | || |||||||| || | |||| ||
Sbjct 26391 GGCA-CAGAAGCTGTGGTATGCCATCCTCGAGGCGCAGACCGAGACCGGCAACCCATTCA 26333
Query 104934 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 104993
|||| ||||| ||| | |||| ||||| || || ||||| |||| ||| |
Sbjct 26332 TGCTGTACAAGGACCACGCCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGCA 26273
Query 104994 GTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 105053
| ||||| ||||| || || ||| | || | | | | || ||| ||||| || |
Sbjct 26272 GCTCCAACCTCTGCACGGAGATCATCGAGTACTCTGCCCCTGACGAGGTTGCTGTCTGCA 26213
Query 105054 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG--ATTA 105111
|||| || || ||||| || || ||| || || |||| | ||| | | |
Sbjct 26212 ACCTGGCGTCCATCGCCCTGCCTCAGTTCGTCGACTATGAGA--ACGACTGCTACAACTT 26155
Query 105112 TGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAG 105171
| || |||||||| || || |||| | ||||| |||| | | ||||
Sbjct 26154 CCAGCTGCTGCACGAAGTCACCCAAGTTGTCGTCCGCAACCTGAACAAGATCGTCGATAT 26095
Query 105172 AAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCT 105231
|| | || || || || ||||| || || ||| | ||||| || || || |
Sbjct 26094 CAACTACTATCCTGTCCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCCTATCGGCGT 26035
Query 105232 CGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGA 105291
|| ||||||||||| || |||| ||| | | |||| | || || || ||
Sbjct 26034 GGGCGTTCAGGGTCTGGCTGATGCCTTCTTGGCTCTCCGCCTGCCCTTCGAGTCGCCTGA 25975
Query 105292 AGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAG 105351
|| | | || || || ||||||||||| || |||||||| || ||
Sbjct 25974 GGCCCGTCAGCTGAACAAGCAGATCTTTGAGACCATCTACCACGCCGCCCTCACCGCATC 25915
Query 105352 TTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACA 105411
| || | || |||| || ||||| || | | ||||| ||||| | ||| ||
Sbjct 25914 GTGCGACATTGCCAAGGTGGACGGTCCCTACTTGTCGTACGAGGGATCTCCCGTTTCTCA 25855
Query 105412 AGGGGTGCTTCAATTTGATATGTGGG--AAGGT-GAGACCAAGCTTCACTACGACTGGGA 105468
|| | ||||| | || ||||||| || || || || | | || ||||||||
Sbjct 25854 GGGTATCCTTCAGTACGACATGTGGGACAACGTCAAGCCCTCGGACCTCTGGGACTGGGA 25795
Query 105469 AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAAT 105528
|| || |||| |||||| || | || | || ||||| | | ||||| || ||
Sbjct 25794 CGCCCTGAAGGCCAAGATCAAGCAGCATGGCGTCCGCAACAGCTTGTTGATGGCGCCTAT 25735
Query 105529 GCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGAC 105588
||| || ||||| ||| | || ||| |||| || || || |||||||| ||||||||| |
Sbjct 25734 GCCCACTGCCTCGACCTCGCAGATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGTC 25675
Query 105589 GAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT--CTC 105646
|||||||| | | | | ||||| || ||||| | | |||||| ||| ||
Sbjct 25674 CAACATCTACCAGCGGCGTGTGCTCGCTGGTGAGTTCCAGGTGGTCAAC--CCATGGCTG 25617
Query 105647 GTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAA 105706
| | ||||| || |||||| |||||| |||| ||||| | | ||| |
Sbjct 25616 CTCAAGGACCTTGTGCAGTGTGGTCTGTGGTCCGAGGACCTGAAGAACCGCATCATCGCC 25557
Query 105707 GCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCGC 105766
| || |||||| || || || ||| || || |||| || ||| | |||
Sbjct 25556 GAGGATGGTTCTATCCAGAACATTCGCAGCATCCCGGATGATATCAAGGCCCTCTACAAG 25497
Query 105767 ACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGC-TT 105825
|| || ||||| ||| | || | || | | |||||||| || ||||| ||| ||
Sbjct 25496 ACCGTCTGGGAGATCTCGCAGAGGACCATCGTCCAGATGGCCGCCGACCGTGG-CGCTTT 25438
Query 105826 CATTGATCAAAGTCAAAGT--ATGAATCTCTTCATG---GAAAGTCCAACGATGTCCAAG 105880
||| || | |||| ||| |||| || |||| ||| || | ||| ||||
Sbjct 25437 CATCGACC--AGTCTCAGTCCCTGAACATCCACATGCGTGAA---CCTTCTATGGGCAAG 25383
Query 105881 CTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTC 105940
|| | |||||| | | | |||||| ||||||||| || || ||||| ||||||
Sbjct 25382 ATCACGAGCATGCACTTCACCGGATGGAAGCTGGGTCTCAAGACTGGCATGTACTACCTC 25323
Query 105941 CGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCA 105974
|| | |||| ||| ||| ||||||||||
Sbjct 25322 CGCACCCAGGCGGCGGCAGCCCCGATTCAGTTCA 25289
>seq1567
Length=91444
Score = 111 bits (122), Expect = 2e-19
Identities = 108/139 (78%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 94805 AGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTA 94864
|||| || ||||||| || || ||||||||||||||| || ||||| | | |
Sbjct 45153 AGCGCCTTGTCGCATTCGCTGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTCGCCTCCA 45212
Query 94865 TTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCT 94924
| | |||||||||||||| || || ||||| ||||| ||||||||||||||| ||||
Sbjct 45213 TCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACCTTCTCCAACGAGCTGATCT 45272
Query 94925 CTCGTGACGAGGGACTCCA 94943
||||||||||||| || ||
Sbjct 45273 CTCGTGACGAGGGTCTACA 45291
>seq1057
Length=53502
Score = 98.7 bits (108), Expect = 1e-15
Identities = 159/226 (70%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762
|||||||||||| ||||||||||||||||| || || | || || |||||||
Sbjct 21602 GGCATCAATCTCGTCAATGAAGACGATGCAGGGCGCGTTCTTCCGGGCCTGCGCAAAGAG 21661
Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 9821
|| || || | | ||| || ||||| ||||||||||| || || | | | || ||
Sbjct 21662 GTCGCGCACTCTCGAGGCACCGACACCGACAAACATCTCGACGAATTCGGAGCCGCTGAC 21721
Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881
| || | ||| || || || ||||| || | || |||||| || |||||||| |
Sbjct 21722 ACTGAA-GAACGGCACGCCCGACTCACCGGCGGTCGCCTTGGCGAGCAGCGTCTTACCAG 21780
Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927
|||| ||| || | | || ||| || || ||||||||||||||
Sbjct 21781 TACCGGGCGGGCCAGACAAGATGGCGCCACGCGGAATCTTGGCGCC 21826
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583243900018320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |