Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1933 212 7e-50 seq1567 111 2e-19 seq1057 98.7 1e-15 >seq1933 Length=42650 Score = 212 bits (234), Expect = 7e-50 Identities = 1126/1774 (63%), Gaps = 36/1774 (2%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| ||||| | ||||| || ||| | || || || || |||| || || Sbjct 27047 CCACAGCACATGCTGATGCGTGTCGCCGTTGGCATCTGGGGAGACAACATCGAGAGGGTT 26988 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 ||||||| ||| || | | ||| | | || | |||| ||||| | || || || || Sbjct 26987 CTGGAGACCTACAACTACCTCTCCAACAAGT-TCTTCACACACGCTTCGCCGACTCTATT 26929 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || || || | || |||| |||||||| | | || |||||||| Sbjct 26928 CAACGCCGGCACGCCTCAGGCACAGCTGTCATCGTGCTTCCTAGTGGACATGAAGGAGGA 26869 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| | |||||||||| || || | | ||||| ||||| ||| ||| || Sbjct 26868 TAGCATCGAGGGTATCTATGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCCGG 26809 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 || ||||| | | |||| | | |||| | || |||| || || || Sbjct 26808 AGGCATTGGTCTCAATGTCCACCGCATCCGTGCCACTGGCTCCTATATTGCCGGCACCAA 26749 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 || || |||| || || || ||||| || || || ||| ||| || ||||| || Sbjct 26748 CGGCACGTCTAATGGCATCATCCCCATGCTGCGTGTCTTCAACAACACTGCTCGCTACGT 26689 Query 104581 AAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCACG 104636 | || | ||| | | | | || | | || |||| || ||||| ||||||| Sbjct 26688 CGACCAGGGTGG-CAACAAGCGCCCCGGTGCCTTTGCCATCTACCTGGAGCCGTGGCACG 26630 Query 104637 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC- 104695 | ||| || | |||||||| || |||| ||||| || | || |||| || ||| Sbjct 26629 CTGATGTCTTCGAGTTCCTCGACCTGCGCAAGAACCACGGAAAGGAAGAGGTCCG-TGCT 26571 Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755 || || |||||| || |||||||| || ||||||||||||||| | || ||| ||| Sbjct 26570 CGTGACCTCTTCCTGGCCCTCTGGATCCCTGATCTCTTCATGAAGCGTGTGGAGAAGAAC 26511 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAG 104815 ||| | ||| | || | || || || || || || || |||| | || ||| Sbjct 26510 GGCGACTGGACCCTTATGTGCCCCAACGAGTGTCCCGGCCTGGCCGACTGCTACGGCGAG 26451 Query 104816 GAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC-GACGGTGCC 104874 ||||| || ||| | ||| ||||| ||| || ||||| | | | | ||| || Sbjct 26450 GAGTTCGAGGCCTTGTACGAGAAGTATGAGCGCGAGGGTCGCG-GCCAGAAGACCTTGAA 26392 Query 104875 AGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACA 104933 || | || | ||||| | || || ||| || | || |||||||| || | |||| || Sbjct 26391 GGCA-CAGAAGCTGTGGTATGCCATCCTCGAGGCGCAGACCGAGACCGGCAACCCATTCA 26333 Query 104934 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 104993 |||| ||||| ||| | |||| ||||| || || ||||| |||| ||| | Sbjct 26332 TGCTGTACAAGGACCACGCCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGCA 26273 Query 104994 GTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 105053 | ||||| ||||| || || ||| | || | | | | || ||| ||||| || | Sbjct 26272 GCTCCAACCTCTGCACGGAGATCATCGAGTACTCTGCCCCTGACGAGGTTGCTGTCTGCA 26213 Query 105054 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG--ATTA 105111 |||| || || ||||| || || ||| || || |||| | ||| | | | Sbjct 26212 ACCTGGCGTCCATCGCCCTGCCTCAGTTCGTCGACTATGAGA--ACGACTGCTACAACTT 26155 Query 105112 TGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAG 105171 | || |||||||| || || |||| | ||||| |||| | | |||| Sbjct 26154 CCAGCTGCTGCACGAAGTCACCCAAGTTGTCGTCCGCAACCTGAACAAGATCGTCGATAT 26095 Query 105172 AAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCT 105231 || | || || || || ||||| || || ||| | ||||| || || || | Sbjct 26094 CAACTACTATCCTGTCCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCCTATCGGCGT 26035 Query 105232 CGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGA 105291 || ||||||||||| || |||| ||| | | |||| | || || || || Sbjct 26034 GGGCGTTCAGGGTCTGGCTGATGCCTTCTTGGCTCTCCGCCTGCCCTTCGAGTCGCCTGA 25975 Query 105292 AGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAG 105351 || | | || || || ||||||||||| || |||||||| || || Sbjct 25974 GGCCCGTCAGCTGAACAAGCAGATCTTTGAGACCATCTACCACGCCGCCCTCACCGCATC 25915 Query 105352 TTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACA 105411 | || | || |||| || ||||| || | | ||||| ||||| | ||| || Sbjct 25914 GTGCGACATTGCCAAGGTGGACGGTCCCTACTTGTCGTACGAGGGATCTCCCGTTTCTCA 25855 Query 105412 AGGGGTGCTTCAATTTGATATGTGGG--AAGGT-GAGACCAAGCTTCACTACGACTGGGA 105468 || | ||||| | || ||||||| || || || || | | || |||||||| Sbjct 25854 GGGTATCCTTCAGTACGACATGTGGGACAACGTCAAGCCCTCGGACCTCTGGGACTGGGA 25795 Query 105469 AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAAT 105528 || || |||| |||||| || | || | || ||||| | | ||||| || || Sbjct 25794 CGCCCTGAAGGCCAAGATCAAGCAGCATGGCGTCCGCAACAGCTTGTTGATGGCGCCTAT 25735 Query 105529 GCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGAC 105588 ||| || ||||| ||| | || ||| |||| || || || |||||||| ||||||||| | Sbjct 25734 GCCCACTGCCTCGACCTCGCAGATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGTC 25675 Query 105589 GAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT--CTC 105646 |||||||| | | | | ||||| || ||||| | | |||||| ||| || Sbjct 25674 CAACATCTACCAGCGGCGTGTGCTCGCTGGTGAGTTCCAGGTGGTCAAC--CCATGGCTG 25617 Query 105647 GTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAA 105706 | | ||||| || |||||| |||||| |||| ||||| | | ||| | Sbjct 25616 CTCAAGGACCTTGTGCAGTGTGGTCTGTGGTCCGAGGACCTGAAGAACCGCATCATCGCC 25557 Query 105707 GCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCGC 105766 | || |||||| || || || ||| || || |||| || ||| | ||| Sbjct 25556 GAGGATGGTTCTATCCAGAACATTCGCAGCATCCCGGATGATATCAAGGCCCTCTACAAG 25497 Query 105767 ACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGC-TT 105825 || || ||||| ||| | || | || | | |||||||| || ||||| ||| || Sbjct 25496 ACCGTCTGGGAGATCTCGCAGAGGACCATCGTCCAGATGGCCGCCGACCGTGG-CGCTTT 25438 Query 105826 CATTGATCAAAGTCAAAGT--ATGAATCTCTTCATG---GAAAGTCCAACGATGTCCAAG 105880 ||| || | |||| ||| |||| || |||| ||| || | ||| |||| Sbjct 25437 CATCGACC--AGTCTCAGTCCCTGAACATCCACATGCGTGAA---CCTTCTATGGGCAAG 25383 Query 105881 CTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTC 105940 || | |||||| | | | |||||| ||||||||| || || ||||| |||||| Sbjct 25382 ATCACGAGCATGCACTTCACCGGATGGAAGCTGGGTCTCAAGACTGGCATGTACTACCTC 25323 Query 105941 CGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCA 105974 || | |||| ||| ||| |||||||||| Sbjct 25322 CGCACCCAGGCGGCGGCAGCCCCGATTCAGTTCA 25289 >seq1567 Length=91444 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 94805 AGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTA 94864 |||| || ||||||| || || ||||||||||||||| || ||||| | | | Sbjct 45153 AGCGCCTTGTCGCATTCGCTGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTCGCCTCCA 45212 Query 94865 TTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCT 94924 | | |||||||||||||| || || ||||| ||||| ||||||||||||||| |||| Sbjct 45213 TCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACCTTCTCCAACGAGCTGATCT 45272 Query 94925 CTCGTGACGAGGGACTCCA 94943 ||||||||||||| || || Sbjct 45273 CTCGTGACGAGGGTCTACA 45291 >seq1057 Length=53502 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 |||||||||||| ||||||||||||||||| || || | || || ||||||| Sbjct 21602 GGCATCAATCTCGTCAATGAAGACGATGCAGGGCGCGTTCTTCCGGGCCTGCGCAAAGAG 21661 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 9821 || || || | | ||| || ||||| ||||||||||| || || | | | || || Sbjct 21662 GTCGCGCACTCTCGAGGCACCGACACCGACAAACATCTCGACGAATTCGGAGCCGCTGAC 21721 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | || | ||| || || || ||||| || | || |||||| || |||||||| | Sbjct 21722 ACTGAA-GAACGGCACGCCCGACTCACCGGCGGTCGCCTTGGCGAGCAGCGTCTTACCAG 21780 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 |||| ||| || | | || ||| || || |||||||||||||| Sbjct 21781 TACCGGGCGGGCCAGACAAGATGGCGCCACGCGGAATCTTGGCGCC 21826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583243900018320