Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq2035 122 3e-22
seq757 118 3e-21
seq1543 114 4e-20
>seq2035
Length=18481
Score = 122 bits (134), Expect = 3e-22
Identities = 427/662 (65%), Gaps = 15/662 (2%)
Strand=Plus/Minus
Query 349271 GCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGT 349330
|| ||||| || || ||| | || || ||||||| ||||| || ||||| || ||||||
Sbjct 14727 GCCAATGACCAGGGCAACCGTACCACCCCATCATTTGTTGCTTTCACCGATACAGAGCGT 14668
Query 349331 ATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGAT 349390
| ||||||||| | || || || || | || || || | || || || || ||
Sbjct 14667 CTCATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCACAACACCGTCTTCGAC 14608
Query 349391 GCTAAGCGACTTATTGGTAG-AAGTTTT-----TCTGACAAATCTACACAATCTGATCTA 349444
|| ||||| | |||||| | ||||| ||||| || || | || |
Sbjct 14607 GCGAAGCGGTTGATTGGTCGCAAGTTCCAGGACTCTGAGG--TC----CAGGCCGACATG 14554
Query 349445 AAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAA 349504
|| || || || || | || | | | ||| || || || | || ||||||||
Sbjct 14553 AAGCACTTCCCCTTCAAGGTCAT-CGAGAAG--GGCAGCAAGCCCGTCATCGAGGTTGAG 14497
Query 349505 TATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAA 349564
| || || || || || || ||||| || || || || ||||| | ||
Sbjct 14496 TTCAAGGGCGAGACCAAGCACTTCACTCCCGAGGAGATCTCCTCCATGGTCCTCACCAAG 14437
Query 349565 ATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTA 349624
||| || | |||||| || || | || | || || | | ||||| | |||||
Sbjct 14436 ATGCGCGAGACTGCTGAGGCCTACCTGGGCGGCACCGTCAACAACGCTGTCGTGACTGTC 14377
Query 349625 CCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGG 349684
|| ||||| || ||||| | ||||| || || || |||||||| |||||| ||
Sbjct 14376 CCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACCAAGGATGCTGGTCTCATTGCCGGC 14317
Query 349685 TTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGAT 349744
| || ||||| | || || || || ||||| ||||| || || || || || |||||
Sbjct 14316 CTGAACGTTCTGCGTATCATCAACGAGCCCACCGCTGCTGCCATCGCCTACGGTCTTGAC 14257
Query 349745 AAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGAT 349804
|| | | || || || | || || || || | || |||||||| || |||
Sbjct 14256 AAGAAGGTCGAGGGCGAGCGCAACGTGCTCATCTTCGACCTGGGCGGTGGTACCTTCGAT 14197
Query 349805 GTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACA 349864
|| || || || || | || ||||| || || || || || | ||||||||||| ||
Sbjct 14196 GTCTCCCTGCTCACCATCGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCTGGTGACACT 14137
Query 349865 CATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAG 349924
|| || ||||| || || || || || ||||| || || ||||| ||| || |||
Sbjct 14136 CACCTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTTGTCTCAGAGTTCAAG 14077
Query 349925 CG 349926
||
Sbjct 14076 CG 14075
>seq757
Length=325751
Score = 118 bits (130), Expect = 3e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||||||||| | | || || || || || || ||||| || ||||| || || || ||
Sbjct 30061 ACCACCACGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 30002
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
| || || || || || || || || ||||||||||| || || ||||| || || ||
Sbjct 30001 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGG 29942
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
|| || || || ||||| ||||| || || ||||| || || | || |||| || ||
Sbjct 29941 GATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGATGACTCCAC 29882
Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || | ||||| || || || || || || || ||||||||
Sbjct 29881 CTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 29834
>seq1543
Length=161075
Score = 114 bits (126), Expect = 4e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||| ||||| || | | || || || || ||||||||||| || || || || || ||
Sbjct 71710 CATGCCACCGCGGAGGCGAAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 71769
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || || || || |||||||||||||| || || ||||| || ||
Sbjct 71770 GGAGAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGG 71829
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || |||||||| || || || || || || || | || || | ||
Sbjct 71830 GGGGATACCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTC 71889
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || | ||||| ||||| || || || || || ||||||||
Sbjct 71890 GACCTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 71940
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515209397891354
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |