Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2035 122 3e-22 seq757 118 3e-21 seq1543 114 4e-20 >seq2035 Length=18481 Score = 122 bits (134), Expect = 3e-22 Identities = 427/662 (65%), Gaps = 15/662 (2%) Strand=Plus/Minus Query 349271 GCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGT 349330 || ||||| || || ||| | || || ||||||| ||||| || ||||| || |||||| Sbjct 14727 GCCAATGACCAGGGCAACCGTACCACCCCATCATTTGTTGCTTTCACCGATACAGAGCGT 14668 Query 349331 ATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGAT 349390 | ||||||||| | || || || || | || || || | || || || || || Sbjct 14667 CTCATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCACAACACCGTCTTCGAC 14608 Query 349391 GCTAAGCGACTTATTGGTAG-AAGTTTT-----TCTGACAAATCTACACAATCTGATCTA 349444 || ||||| | |||||| | ||||| ||||| || || | || | Sbjct 14607 GCGAAGCGGTTGATTGGTCGCAAGTTCCAGGACTCTGAGG--TC----CAGGCCGACATG 14554 Query 349445 AAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAA 349504 || || || || || | || | | | ||| || || || | || |||||||| Sbjct 14553 AAGCACTTCCCCTTCAAGGTCAT-CGAGAAG--GGCAGCAAGCCCGTCATCGAGGTTGAG 14497 Query 349505 TATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAA 349564 | || || || || || || ||||| || || || || ||||| | || Sbjct 14496 TTCAAGGGCGAGACCAAGCACTTCACTCCCGAGGAGATCTCCTCCATGGTCCTCACCAAG 14437 Query 349565 ATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTA 349624 ||| || | |||||| || || | || | || || | | ||||| | ||||| Sbjct 14436 ATGCGCGAGACTGCTGAGGCCTACCTGGGCGGCACCGTCAACAACGCTGTCGTGACTGTC 14377 Query 349625 CCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGG 349684 || ||||| || ||||| | ||||| || || || |||||||| |||||| || Sbjct 14376 CCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACCAAGGATGCTGGTCTCATTGCCGGC 14317 Query 349685 TTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGAT 349744 | || ||||| | || || || || ||||| ||||| || || || || || ||||| Sbjct 14316 CTGAACGTTCTGCGTATCATCAACGAGCCCACCGCTGCTGCCATCGCCTACGGTCTTGAC 14257 Query 349745 AAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGAT 349804 || | | || || || | || || || || | || |||||||| || ||| Sbjct 14256 AAGAAGGTCGAGGGCGAGCGCAACGTGCTCATCTTCGACCTGGGCGGTGGTACCTTCGAT 14197 Query 349805 GTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACA 349864 || || || || || | || ||||| || || || || || | ||||||||||| || Sbjct 14196 GTCTCCCTGCTCACCATCGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCTGGTGACACT 14137 Query 349865 CATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAG 349924 || || ||||| || || || || || ||||| || || ||||| ||| || ||| Sbjct 14136 CACCTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTTGTCTCAGAGTTCAAG 14077 Query 349925 CG 349926 || Sbjct 14076 CG 14075 >seq757 Length=325751 Score = 118 bits (130), Expect = 3e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || || || ||||| || ||||| || || || || Sbjct 30061 ACCACCACGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 30002 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || || || || || || ||||||||||| || || ||||| || || || Sbjct 30001 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGG 29942 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || ||||| ||||| || || ||||| || || | || |||| || || Sbjct 29941 GATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGATGACTCCAC 29882 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || || |||||||| Sbjct 29881 CTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 29834 >seq1543 Length=161075 Score = 114 bits (126), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| || | | || || || || ||||||||||| || || || || || || Sbjct 71710 CATGCCACCGCGGAGGCGAAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 71769 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || |||||||||||||| || || ||||| || || Sbjct 71770 GGAGAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGG 71829 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || |||||||| || || || || || || || | || || | || Sbjct 71830 GGGGATACCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTC 71889 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || || |||||||| Sbjct 71890 GACCTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 71940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515209397891354