Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1933 286 4e-72
seq36 129 6e-25
seq1567 87.8 2e-12
>seq1933
Length=42650
Score = 286 bits (316), Expect = 4e-72
Identities = 527/761 (69%), Gaps = 10/761 (1%)
Strand=Plus/Minus
Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254
||||| |||||| | || ||| || ||| || | | | || | ||||| ||| ||
Sbjct 27032 ATGCGTGTCGCCGTTGGCATCTGGGGAGACAACATCGAGAGGGTTCTGGAGACCTACAAC 26973
Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314
| | | | |||| ||| || ||||| |||| || || |||||||| || ||| |
Sbjct 26972 TACCTCTCCAACAAGTTCTTCACACACGCTTCGCCGACTCTATTCAACGCCGGCACGCCT 26913
Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374
|| | ||| |||| |||||||| |||| |||||||| || ||||| || |||
Sbjct 26912 CAGGCACAGCTGTCATCGTGCTTCCTAGTGGACATGAAGGAGGATAGCATCGAGGGTATC 26853
Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434
|| || || |||||| |||||| ||||||||| | | || || || ||| || |
Sbjct 26852 TATGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCCGGAGGCATTGGTCTCAA- 26794
Query 53435 TGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492
|| || | || ||||||| | ||| | || || || |||||| | |||
Sbjct 26793 TG-TCCACCGCATCCGTGCCACTGGCTCCTATATTGCCGGCACCAACGGCACGTCTAATG 26735
Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552
| ||| | || ||||| || |||||||||||||| || || |||||| ||||||||||
Sbjct 26734 GCATCATCCCCATGCTGCGTGTCTTCAACAACACTGCTCGCTACGTCGACCAGGGTGGCA 26675
Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612
|||||| || | || ||||||||||| |||||||||||||| || | | ||||
Sbjct 26674 ACAAGCGCCCCGGTGCCTTTGCCATCTACCTGGAGCCGTGGCACGCTGATGTCTTCGAGT 26615
Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACA 53671
| ||||| ||||| ||| || || | |||||| | || ||| |||||||| ||
Sbjct 26614 TCCTCGACCTGCGCAAGAACCACGGAAAGGAAGAGGTCCG-TGCTCGTGACCTCTTCCTG 26556
Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731
|| || ||||| || || ||||||||| | ||||||||| ||| || ||| |||
Sbjct 26555 GCCCTCTGGATCCCTGATCTCTTCATGAAGCGTGTGGAGAAGAACGGCGACTGGACCCTT 26496
Query 53732 ATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790
|||||||| |||||||| |||||||| | | || |||||| |||||||| | | |
Sbjct 26495 ATGTGCCCCAACGAGTGTCCCGGCCTGGCCGACTG-CTACGGCGAGGAGTTCGAGGCCTT 26437
Query 53791 GTATCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTAT 53849
||| || ||| | || | |||| ||| | |||||| | ||||| | || | |
Sbjct 26436 GTACGAGAAGTATG-AGCGCGAGGGTCGCGGCCAGAAGACCTTGAAGGCACAGAAGCTGT 26378
Query 53850 GGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATT 53909
|| |||| |||||| || ||| ||||| || | || | |||| ||||||||
Sbjct 26377 GGTATGCCATCCTCGAGGCGCAGACCGAGACCGGCAACCCATTCATGCTGTACAAGGACC 26318
Query 53910 CGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATC 53950
| |||| |||||||||||||||||| | ||| ||||
Sbjct 26317 ACGCCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATC 26277
Score = 122 bits (134), Expect = 1e-22
Identities = 310/461 (67%), Gaps = 23/461 (5%)
Strand=Plus/Minus
Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537
||| | |||||| | || | ||||||| ||||| || || ||||| | |||||| ||
Sbjct 25766 GGCGTCCGCAACAGCTTGTTGATGGCGCCTATGCCCACTGCCTCGACCTCGCAGATCCTG 25707
Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597
|||||||||||| || ||||| |||||| |||||||||||| ||| || || ||
Sbjct 25706 GGCAACAACGAGTGCTTTGAGCCCTACACGTCCAACATCTACCAGCGGCGTGTGCTCGCT 25647
Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCT---GCAGAA-GATCAACAA 55653
|||||||| || ||||| || |||||||||| |||| | ||
Sbjct 25646 GGTGAGTTCCAGGTGGTCAACCCATGGCTGCTCAAGGACCTTGTGCAGTGTGGTCT---- 25591
Query 55654 GTGGAACCCGCAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCT- 55710
|||| | | | | |||| || || | || | | || || ||||||| |
Sbjct 25590 GTGGTCCGAGGACCTGAAGAACCGCATCATCGCCG--AGGATGGTTCTATCCAGAACATT 25533
Query 55711 -GGAGATTCCTCTGCG-TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAG 55768
| || ||| | | |||||| | ||| ||| || |||||||| | |||| |
Sbjct 25532 CGCAGCATCCCGGATGATATCAAGGCCCTCTACAAGACCGTCTGGGAGATCTCGCAGAGG 25473
Query 55769 AGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAAC 55828
| | | | ||| || || ||||| || | |||||||||||| ||||| ||||||
Sbjct 25472 ACCATCGTCCAGATGGCCGCCGACCGTGGCGCTTTCATCGACCAGTCTCAGTCCCTGAAC 25413
Query 55829 ATCTTCATG-GAGAATCCTTCACTGGCCAAGTT---GAGCTCGATGCACTTTTACGGGTG 55884
||| |||| | ||| ||||| ||| |||| | |||| |||||||| ||| ||
Sbjct 25412 ATCCACATGCGTGAA-CCTTCTATGGGCAAGATCACGAGC---ATGCACTTCACCGGATG 25357
Query 55885 GAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCC 55925
|||| ||| |||||||| || |||||||| || || ||||
Sbjct 25356 GAAGCTGGGTCTCAAGACTGGCATGTACTACCTCCGCACCC 25316
>seq36
Length=104965
Score = 129 bits (142), Expect = 6e-25
Identities = 285/425 (67%), Gaps = 2/425 (0%)
Strand=Plus/Minus
Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935
|| || |||||||| || ||||| ||| || | ||| || | | |||||||| | |
Sbjct 5489 CCAGTTCCGATGCCATCAGCACCATTGCAGAGGACCATTGGGAGGACCGGGGCGTACACC 5430
Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAA-ACGGAATTGTCAGCCGG 151994
| || || | ||| | ||| || || | | || ||| | || | | |||| |
Sbjct 5429 TTGGGTTCAATCTGCTTACCATCCTCGAACT-GTGCTTCGAGGACCGGCTCGTCAAGAGC 5371
Query 151995 ATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGC 152054
| ||| | ||||| | | |||| | ||| || |||||||| || | |||||| ||
Sbjct 5370 AGAGAACACTCGTCGGGCGAAAGGAGATAGACGAGTAAAGATGTAACGAGCGCTGGCGGC 5311
Query 152055 ATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTT 152114
||| | ||||| || || || | || || | ||| ||| || |||| ||||| |||
Sbjct 5310 ATCGCTACCACCAGCGAGACGAGAACCGAAGTTACCACTGGGTTCCAGGATGTTGACGTT 5251
Query 152115 GTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACC 152174
||| | || ||||| ||||| || | || || || ||||| || |||||
Sbjct 5250 GTTCGAACCGACGAAGTTCTGTGCGAGGCCAACGATGGTCTGTTGCAGCGAGGCCTCACC 5191
Query 152175 GTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGT 152234
|||||| || || || || || | || || || |||| | |||||||| ||||| |
Sbjct 5190 GTGGTGGTAAGCAGTTTGTTCAGAGACATAGCCAGCCAGTTCAACCACCTTCTTGTCCTT 5131
Query 152235 CGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294
||||||||| ||||| |||||| | | ||||| | |||| ||||||| || ||
Sbjct 5130 GGTCAGGTTCCGCTTGAAGCAGGCGAACACAACCTTCCTCTGGCCAGGTTTCAGGCCATC 5071
Query 152295 CACCA 152299
|||||
Sbjct 5070 CACCA 5066
>seq1567
Length=91444
Score = 87.8 bits (96), Expect = 2e-12
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843
|||| || || || || | || |||||||| || ||||||||||| | ||| ||||||
Sbjct 45270 ATCAGCTCGTTGGAGAAGGTCAGACCAGGCATCAGGCCACGCTTCTTGAGCCAGAAGATG 45211
Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903
| ||||| || ||||||||||| || ||||| || || ||||||||||| |||
Sbjct 45210 GAGGCGAAGGCGCCGCTGAAGAAGATACCCTCGACGGCAGCGAATGCGACAAGGCGCTGC 45151
Query 74904 GCG 74906
|||
Sbjct 45150 GCG 45148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547200144416400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |