Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1933 286 4e-72 seq36 129 6e-25 seq1567 87.8 2e-12 >seq1933 Length=42650 Score = 286 bits (316), Expect = 4e-72 Identities = 527/761 (69%), Gaps = 10/761 (1%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| |||||| | || ||| || ||| || | | | || | ||||| ||| || Sbjct 27032 ATGCGTGTCGCCGTTGGCATCTGGGGAGACAACATCGAGAGGGTTCTGGAGACCTACAAC 26973 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 | | | | |||| ||| || ||||| |||| || || |||||||| || ||| | Sbjct 26972 TACCTCTCCAACAAGTTCTTCACACACGCTTCGCCGACTCTATTCAACGCCGGCACGCCT 26913 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 || | ||| |||| |||||||| |||| |||||||| || ||||| || ||| Sbjct 26912 CAGGCACAGCTGTCATCGTGCTTCCTAGTGGACATGAAGGAGGATAGCATCGAGGGTATC 26853 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434 || || || |||||| |||||| ||||||||| | | || || || ||| || | Sbjct 26852 TATGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCCGGAGGCATTGGTCTCAA- 26794 Query 53435 TGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 || || | || ||||||| | ||| | || || || |||||| | ||| Sbjct 26793 TG-TCCACCGCATCCGTGCCACTGGCTCCTATATTGCCGGCACCAACGGCACGTCTAATG 26735 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | ||| | || ||||| || |||||||||||||| || || |||||| |||||||||| Sbjct 26734 GCATCATCCCCATGCTGCGTGTCTTCAACAACACTGCTCGCTACGTCGACCAGGGTGGCA 26675 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 |||||| || | || ||||||||||| |||||||||||||| || | | |||| Sbjct 26674 ACAAGCGCCCCGGTGCCTTTGCCATCTACCTGGAGCCGTGGCACGCTGATGTCTTCGAGT 26615 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACA 53671 | ||||| ||||| ||| || || | |||||| | || ||| |||||||| || Sbjct 26614 TCCTCGACCTGCGCAAGAACCACGGAAAGGAAGAGGTCCG-TGCTCGTGACCTCTTCCTG 26556 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731 || || ||||| || || ||||||||| | ||||||||| ||| || ||| ||| Sbjct 26555 GCCCTCTGGATCCCTGATCTCTTCATGAAGCGTGTGGAGAAGAACGGCGACTGGACCCTT 26496 Query 53732 ATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790 |||||||| |||||||| |||||||| | | || |||||| |||||||| | | | Sbjct 26495 ATGTGCCCCAACGAGTGTCCCGGCCTGGCCGACTG-CTACGGCGAGGAGTTCGAGGCCTT 26437 Query 53791 GTATCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTAT 53849 ||| || ||| | || | |||| ||| | |||||| | ||||| | || | | Sbjct 26436 GTACGAGAAGTATG-AGCGCGAGGGTCGCGGCCAGAAGACCTTGAAGGCACAGAAGCTGT 26378 Query 53850 GGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATT 53909 || |||| |||||| || ||| ||||| || | || | |||| |||||||| Sbjct 26377 GGTATGCCATCCTCGAGGCGCAGACCGAGACCGGCAACCCATTCATGCTGTACAAGGACC 26318 Query 53910 CGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATC 53950 | |||| |||||||||||||||||| | ||| |||| Sbjct 26317 ACGCCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATC 26277 Score = 122 bits (134), Expect = 1e-22 Identities = 310/461 (67%), Gaps = 23/461 (5%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||| | || | ||||||| ||||| || || ||||| | |||||| || Sbjct 25766 GGCGTCCGCAACAGCTTGTTGATGGCGCCTATGCCCACTGCCTCGACCTCGCAGATCCTG 25707 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 |||||||||||| || ||||| |||||| |||||||||||| ||| || || || Sbjct 25706 GGCAACAACGAGTGCTTTGAGCCCTACACGTCCAACATCTACCAGCGGCGTGTGCTCGCT 25647 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCT---GCAGAA-GATCAACAA 55653 |||||||| || ||||| || |||||||||| |||| | || Sbjct 25646 GGTGAGTTCCAGGTGGTCAACCCATGGCTGCTCAAGGACCTTGTGCAGTGTGGTCT---- 25591 Query 55654 GTGGAACCCGCAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCT- 55710 |||| | | | | |||| || || | || | | || || ||||||| | Sbjct 25590 GTGGTCCGAGGACCTGAAGAACCGCATCATCGCCG--AGGATGGTTCTATCCAGAACATT 25533 Query 55711 -GGAGATTCCTCTGCG-TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAG 55768 | || ||| | | |||||| | ||| ||| || |||||||| | |||| | Sbjct 25532 CGCAGCATCCCGGATGATATCAAGGCCCTCTACAAGACCGTCTGGGAGATCTCGCAGAGG 25473 Query 55769 AGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAAC 55828 | | | | ||| || || ||||| || | |||||||||||| ||||| |||||| Sbjct 25472 ACCATCGTCCAGATGGCCGCCGACCGTGGCGCTTTCATCGACCAGTCTCAGTCCCTGAAC 25413 Query 55829 ATCTTCATG-GAGAATCCTTCACTGGCCAAGTT---GAGCTCGATGCACTTTTACGGGTG 55884 ||| |||| | ||| ||||| ||| |||| | |||| |||||||| ||| || Sbjct 25412 ATCCACATGCGTGAA-CCTTCTATGGGCAAGATCACGAGC---ATGCACTTCACCGGATG 25357 Query 55885 GAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCC 55925 |||| ||| |||||||| || |||||||| || || |||| Sbjct 25356 GAAGCTGGGTCTCAAGACTGGCATGTACTACCTCCGCACCC 25316 >seq36 Length=104965 Score = 129 bits (142), Expect = 6e-25 Identities = 285/425 (67%), Gaps = 2/425 (0%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || |||||||| || ||||| ||| || | ||| || | | |||||||| | | Sbjct 5489 CCAGTTCCGATGCCATCAGCACCATTGCAGAGGACCATTGGGAGGACCGGGGCGTACACC 5430 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAA-ACGGAATTGTCAGCCGG 151994 | || || | ||| | ||| || || | | || ||| | || | | |||| | Sbjct 5429 TTGGGTTCAATCTGCTTACCATCCTCGAACT-GTGCTTCGAGGACCGGCTCGTCAAGAGC 5371 Query 151995 ATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGC 152054 | ||| | ||||| | | |||| | ||| || |||||||| || | |||||| || Sbjct 5370 AGAGAACACTCGTCGGGCGAAAGGAGATAGACGAGTAAAGATGTAACGAGCGCTGGCGGC 5311 Query 152055 ATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTT 152114 ||| | ||||| || || || | || || | ||| ||| || |||| ||||| ||| Sbjct 5310 ATCGCTACCACCAGCGAGACGAGAACCGAAGTTACCACTGGGTTCCAGGATGTTGACGTT 5251 Query 152115 GTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACC 152174 ||| | || ||||| ||||| || | || || || ||||| || ||||| Sbjct 5250 GTTCGAACCGACGAAGTTCTGTGCGAGGCCAACGATGGTCTGTTGCAGCGAGGCCTCACC 5191 Query 152175 GTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGT 152234 |||||| || || || || || | || || || |||| | |||||||| ||||| | Sbjct 5190 GTGGTGGTAAGCAGTTTGTTCAGAGACATAGCCAGCCAGTTCAACCACCTTCTTGTCCTT 5131 Query 152235 CGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294 ||||||||| ||||| |||||| | | ||||| | |||| ||||||| || || Sbjct 5130 GGTCAGGTTCCGCTTGAAGCAGGCGAACACAACCTTCCTCTGGCCAGGTTTCAGGCCATC 5071 Query 152295 CACCA 152299 ||||| Sbjct 5070 CACCA 5066 >seq1567 Length=91444 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 |||| || || || || | || |||||||| || ||||||||||| | ||| |||||| Sbjct 45270 ATCAGCTCGTTGGAGAAGGTCAGACCAGGCATCAGGCCACGCTTCTTGAGCCAGAAGATG 45211 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 | ||||| || ||||||||||| || ||||| || || ||||||||||| ||| Sbjct 45210 GAGGCGAAGGCGCCGCTGAAGAAGATACCCTCGACGGCAGCGAATGCGACAAGGCGCTGC 45151 Query 74904 GCG 74906 ||| Sbjct 45150 GCG 45148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547200144416400