Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1933 329 4e-85 seq1543 194 2e-44 seq757 190 2e-43 seq36 159 4e-34 seq1759 116 4e-21 seq1567 95.1 1e-14 >seq1933 Length=42650 Score = 329 bits (364), Expect = 4e-85 Identities = 881/1329 (66%), Gaps = 41/1329 (3%) Strand=Plus/Plus Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCG 80415 ||||| || ||||| || ||| | || | ||| | ||||| |||||||| |||| Sbjct 25639 AACTCACCAGCGAGCACACGCCGCTGGTAGATGTTGGACGTGTAGGGCTCAAAGCACTCG 25698 Query 80416 TTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTC 80475 ||||| || |||||||| | || || || ||||| || | | ||||| || Sbjct 25699 TTGTTGCCCAGGATCTGCGAGGTCGAGGCAGTGGGCATAGGCGCCATCAACAAGCTGTTG 25758 Query 80476 CGCAGGCCGTGCTTCTTGATAT----CCTC---GCG--CAAATCTGACCAAAAATCAACC 80526 || | ||| |||| |||||| | | || ||| | | || ||| | || Sbjct 25759 CGGACGCCATGCTGCTTGATCTTGGCCTTCAGGGCGTCCCAGTC---CCAGAGGTC---- 25811 Query 80527 CCAACGCTGTGAC-----CCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACC 80581 | | ||| |||| |||||||||||| ||| | ||| |||| || | ||||| | Sbjct 25812 CGAGGGCT-TGACGTTGTCCCACATGTCGTACTGAAGGATACCCTGAGAAACGGGAGATC 25870 Query 80582 CCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCG 80641 || || ||| | ||| || || ||| |||||| | || ||||| | | ||||| | Sbjct 25871 CCTCGTACGACAAGTAGGGACCGTCCACCTTGGCAATGTCGCACGATGCGGTGAGGGCGG 25930 Query 80642 CGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACG 80701 |||| || ||| |||||||| |||||||| || |||| || ||||| | Sbjct 25931 CGTGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGGGCCTCAGGCGACTCGAAGG 25990 Query 80702 ACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGT 80761 || || | || ||| | |||||||| ||||||||||| | | |||| ||||||| Sbjct 25991 GCAGGCGGAGAGCCAAGAAGGCATCAGCCAGACCCTGAACGCCCACGCCGATAGGGCGGT 26050 Query 80762 GGCGCTTGTTCGATCGCTCG-GCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGG 80820 ||||| |||| | | || |||||| | | || || |||| |||||| || | Sbjct 26051 GGCGCATGTT-GCTGTTGCGAGCCTCCTGGACAGGATAGTAGTTGATATCGACGATCTTG 26109 Query 80821 TTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT---TGG 80877 ||||||||||| ||||| | || || || || || ||| |||| | | | | Sbjct 26110 TTCAGGTTGCGGACGACAACTTGGGTGACTTCGTGCAGCAGCTGGAAGTTGTAGCAGTCG 26169 Query 80878 TTCCCCT--TC-ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCT 80934 ||| | | || || || || ||| | ||||||||| ||||| || || ||||| Sbjct 26170 TTCTCATAGTCGACGAACTGAGGCAGGGCGATGGACGCCAGGTTGCAGACAGCAACCTCG 26229 Query 80935 TCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGG 80994 |||| | | |||||| ||| |||||||| | || || || || |||||| Sbjct 26230 TCAGGGGCAGAGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGCCCAGG 26289 Query 80995 TTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTC 81054 || |||||||| |||| |||| ||||||||| |||| | ||| | |||||| Sbjct 26290 TTCTTCTGGTTGCTCTTGCGGTTGGCGTGGTCCTTGTACAGCATGAATGGGTTGCCGGTC 26349 Query 81055 TCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAAT 81114 ||| ||| | || ||||||||| | ||| | || | ||||| | ||| || Sbjct 26350 TCGGTCTGCGCCTCGAGGATGGCATACCACAGCTTCTGTGCCTTCAAGGTCTTCTGGCCG 26409 Query 81115 TTGCCTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGT 81173 || ||| | ||||||| |||| | ||||||| | |||| | ||| | | Sbjct 26410 CGACCCTCGCGCTCATACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGT-CGGC 26468 Query 81174 GAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTT 81233 ||| | || |||||||| |||||||| ||| ||||||| || ||||| ||| ||| Sbjct 26469 CAGGCCGGGACACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTT 26528 Query 81234 CATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCAT 81292 |||||| ||||||||||||||||| ||| ||||| || ||| || |||| || | Sbjct 26529 CATGAAGAGATCAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCA-CGGACCTCTTCCT 26587 Query 81293 CACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGAT 81352 || ||||| ||||| ||||| || || | || || || ||||| |||||||| | Sbjct 26588 TTCCGTGGTTCTTGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGT 26647 Query 81353 ACACGGCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGT 81409 | | ||| | | || ||| ||||||||||| |||||| || ||||| || Sbjct 26648 AGATGGCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGT 26707 Query 81410 TAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCG 81469 | || ||||||| ||| |||||||| |||| ||| ||||| || || | ||| | Sbjct 26708 TGAAGACACGCAGCATGGGGATGATGCCATTAGACGTGCCGTTGGTGCCGGCAATATAGG 26767 Query 81470 ACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAAT 81527 | || |||| || | | || |||| ||||| ||||| || | | ||| || || Sbjct 26768 AGCCAGTGGCACGGATGCGGTGGACATTG--AGACCAATGCCTCCGGCCATCTTGGAGAT 26825 Query 81528 CTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAG 81587 | ||||| || | ||| ||||| || |||||||||||||| | |||||||| | Sbjct 26826 CATGGCACAGGTCTTGAGGGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCCAC 26885 Query 81588 CAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGC 81647 | ||| || ||||| ||| | | |||||| ||||| || || || | || Sbjct 26886 TAGGAAGCACGATGACAGCTGTGCCTGAGGCGTGCCGGCGTTGAATAGAGTCGGCGAAGC 26945 Query 81648 GTGAATGAA 81656 ||| |||| Sbjct 26946 GTGTGTGAA 26954 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || || || ||||||||||| |||||||| ||| |||||| ||| | |||| Sbjct 25312 GCCTGGGTGCGGAGGTAGTACATGCCAGTCTTGAGACCCAGCTTCCATCCGGTGAAGTGC 25371 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTC-CATGAAGATGTTCAGAGACTGAGACTG 80150 || ||| ||| | | | || ||| | |||| ||||||||| ||||||||||| Sbjct 25372 ATGCTCGTGATCTTGCCCATAGAAGG-TTCACGCATGTGGATGTTCAGGGACTGAGACTG 25430 Query 80151 ACAGATGAAAGCCCCACGATCTGCCGCCAT 80180 ||||||||| ||||| || || ||||| Sbjct 25431 GTCGATGAAAGCGCCACGGTCGGCGGCCAT 25460 >seq1543 Length=161075 Score = 194 bits (214), Expect = 2e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||||| ||||||||||| || || || ||||| ||||| Sbjct 71940 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCC 71881 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || ||||||||||||||||| || || ||||||||| Sbjct 71880 GACACCATCGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGTATCCCCCCAGACCAG 71821 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || |||||||| ||||| |||||||| | |||||||| | ||||| || Sbjct 71820 CAGCGCCTCATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAAC 71761 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| || || ||| | || || |||||||| Sbjct 71760 ATCCAGAAGGAGTCTACTCTCCACCTCGTCCTTCGCCTCCGCGGTGG 71714 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || ||||||||||| ||||| Sbjct 72168 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCC 72109 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || ||||||||||||||||| || ||||| |||||| Sbjct 72108 GACACCATCGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAG 72049 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| || || ||||| |||||||| | || ||||| | ||||| || Sbjct 72048 CAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 71989 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| ||||| || ||| | ||||| || || || Sbjct 71988 ATCCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTGCGTGGCGG 71942 Score = 181 bits (200), Expect = 1e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || ||||| ||||| ||||| Sbjct 71712 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCG 71653 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || ||||||| || ||||||||||||||||| || || ||||||||| Sbjct 71652 GATACAATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAG 71593 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || ||||||| || || || ||||||| || Sbjct 71592 CAGCGTCTCATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGGACACTCTCAGACTACAAC 71533 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| || || || || | || ||||||| || |||||||| Sbjct 71532 ATTCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTGCGTGGTGGACA 71483 >seq757 Length=325751 Score = 190 bits (210), Expect = 2e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| || || ||||||||||| || |||||||| |||||| Sbjct 29831 ATCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCA 29890 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| | ||||| ||||| |||||||||||||| || || |||||| Sbjct 29891 TCCGACACCATCGACAATGTCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGAC 29950 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || || |||||||| ||||| |||||||| | || ||||| | ||||| Sbjct 29951 CAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTAC 30010 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | || ||||| ||||| || || || ||| |||| || || ||||| Sbjct 30011 AACATTCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGCGTGGTGG 30060 >seq36 Length=104965 Score = 159 bits (176), Expect = 4e-34 Identities = 305/443 (69%), Gaps = 6/443 (1%) Strand=Plus/Plus Query 31963 CGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCC 32022 || ||||| ||| | ||| ||| ||||| || ||| ||| | ||||| | | |||| Sbjct 5050 CGATCCATCCCATCCATGGTGGATGGCCTGAAACCTGGCCAGAGGAAGGTTGTGTTCGCC 5109 Query 32023 TGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCA 32082 ||| ||||| ||||||| | | |||| |||||||| | ||| | ||||| || | Sbjct 5110 TGCTTCAAGCGGAACCTGACCAAGGACAAGAAGGTGGTTGAACTGGCTGGCTATGTCTCT 5169 Query 32083 GAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCT 32142 || ||||| || || |||||||| ||||| ||||| || ||||| || ||| || Sbjct 5170 GAACAAACTGCTTACCACCACGGTGAGGCCTCGCTGCAACAGACCATCGTTGGCCTCGCA 5229 Query 32143 CAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACC 32202 |||||||| |||||| | || ||| | ||| | || || || ||| | || || | Sbjct 5230 CAGAACTTCGTCGGTTCGAACAACGTCAACATCCTGGAACCCAGTGGTAACTTCGGTTCT 5289 Query 32203 CGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCACC- 32261 || ||||| ||||| | ||||| || ||| | ||||||||||| || ||||| | || Sbjct 5290 CGTCTCGCTGGTGGTAGCGATGCCGCCAGCGCTCGTTACATCTTTACTCGTCTATCTCCT 5349 Query 32262 TTCGACGCGCAAG-ATTTTCGACCCGTCGGACGATGCGGTGCTC-AAGTACAATTTTGAT 32319 |||| | | || || || | | | ||||| |||| ||| ||| || | || || Sbjct 5350 TTCGCCCGACGAGTGTTCTCTGCTCTT--GACGAGCCGGTCCTCGAAGCAC-AGTTCGAG 5406 Query 32320 GACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAAC 32379 || ||| ||| | | || || | | ||| ||||| || || ||| || | || Sbjct 5407 GATGGTAAGCAGATTGAACCCAAGGTGTACGCCCCGGTCCTCCCAATGGTCCTCTGCAAT 5466 Query 32380 GGTGCAGAAGGCATCGGAACGGG 32402 ||||| || ||||||||||| || Sbjct 5467 GGTGCTGATGGCATCGGAACTGG 5489 >seq1759 Length=81252 Score = 116 bits (128), Expect = 4e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| || ||||| || || ||||||||||| || || ||||| ||||| || | ||| Sbjct 67026 CTTCGTGAAGACCCTGACGGGCAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACCAT 66967 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | || | ||||| || || |||||||||||||| ||||| || ||||||||||| | Sbjct 66966 CGACAACGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATT 66907 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || || || ||||| || ||||||| || || || | ||||| || |||| || Sbjct 66906 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCCGACTACAACATCCAGAA 66847 Query 27594 GG 27595 || Sbjct 66846 GG 66845 >seq1567 Length=91444 Score = 95.1 bits (104), Expect = 1e-14 Identities = 261/392 (67%), Gaps = 16/392 (4%) Strand=Plus/Plus Query 64771 TCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTG 64830 || || |||||||| || ||||| ||||||||||| |||||| | || || ||||||||| Sbjct 45209 TCCATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACCTTCTCCAACGAGCTG 45268 Query 64831 ATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACC--CTGTTCAGCCACCTCA 64888 |||||||| |||||||| || || || || || | || |||||| |||||| | Sbjct 45269 ATCTCTCGTGACGAGGGTCTACATACTGACTT--CGCCTGCCTGCTGTTCTCCCACCTGA 45326 Query 64889 AGGA-CAAACCATCA--CATGGGACTATAATTGATATAGTAAAATCGGCTGTAGAAATTG 64945 | | | ||| || || | | || | | ||| | | || || | |||| Sbjct 45327 ACAACCGGCCCAGCAAGCA-GCGCGTAGA--GGCTATCATCACGGATGCCGTTGTCATTG 45383 Query 64946 AAAAGGAATTCATTACTGCCGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAGA 65005 | ||||| ||| | |||| || || || ||| | || |||||||| | ||| || Sbjct 45384 AGAAGGAGTTCCTGACTGAGGCCCTGCCCTGTGGCCTGCTCGGCATGAACGCCACCCTGA 45443 Query 65006 TGAAACAGTATATCGAATTTGTAGCAGATCGCCTGCTTACTCAGTTTGGTA---TTAAGC 65062 |||| ||||| || || || || || || || || || | || | ||| Sbjct 45444 TGAAGCAGTACATTGAGTTCGTCGCCGACCGTCTCCTCGTCGCCCTCGGCAACGAGAAGG 45503 Query 65063 CCTACTGGAATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGA 65122 |||| || ||||| || || || |||| ||||||| ||| ||| | || |||| Sbjct 45504 TCTAC---AAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGA 45560 Query 65123 CTAACTTTTTTGAAAAGAGGGTAGGTGATTAC 65154 | ||||| || || ||| | || ||||| ||| Sbjct 45561 CCAACTTCTTCGAGAAGCGTGTTGGTGACTAC 45592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570293875256160