Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq813 181 9e-41
>seq813
Length=186750
Score = 181 bits (200), Expect = 9e-41
Identities = 439/670 (66%), Gaps = 56/670 (8%)
Strand=Plus/Plus
Query 29839 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTA 29898
||||||| | ||||||||||| ||||| ||| | |||| || |||| |||| |||
Sbjct 155361 GGGAAAGTCGCGCGGCTCCCTCTCCAGCTGTGTCCTGAGCGCGTCGACGTGGTCCACGTA 155420
Query 29899 GACGTGAGCGTCTCCCAGGTTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957
||| || ||||| |||| | ||| | || || ||||| | || | ||||| |
Sbjct 155421 GACATGCGCGTCGCCCATGACGTGCGTCAGGCTG-CCCGGCACGAGATCACACACGTGCG 155479
Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017
| ||||||| || || || | ||||||||||||||| || || || ||||| |||||||
Sbjct 155480 CGATCATGTGTGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCGAGGCCCATGT 155539
Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCT----------CTCCG--TCGC------ 30059
| | |||| |||||| ||||| || || | || || ||||
Sbjct 155540 CGCAGGACCGCTGGTACAGCTGGCAGTGCAGGTGGCCCTTGGGCTTCGCCTCGCCATCCC 155599
Query 30060 -----TC-------------------------ACGTAAAACTG---ACACATGGCGTGGC 30086
|| ||||| ||||| | ||||| || |
Sbjct 155600 CGCTGTCCTGCCCCGCCGGCCGTGGATACGATACGTAGAACTGCGCAAACATG---TGAC 155656
Query 30087 ACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCC 30146
| || || || ||||||| || ||||||||||||||| |||| || |||||||||||
Sbjct 155657 AGGGCGGCAGCGCCATGATCTTCAGGTCTTTGGGGTTCCACGCGCTCATGATGATGCGCC 155716
Query 30147 TGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCC 30206
||| | ||||| |||||| || | | | | |||||| || || ||| |
Sbjct 155717 GGTCGTACGGGTTCGTCCTGAGCTTGTGTATGACCTCCGCCAGCTGGTCGACGCCCTGGC 155776
Query 30207 CCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGT 30266
||| |||||| | |||| |||| |||||| || || || || | ||||||||| ||||
Sbjct 155777 CCGTGTAGTCCGTCCTCGCGTCCACGTACTCGGCCCCAAAGTGGCGCCACTGGAAGCCGT 155836
Query 30267 ACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTC 30326
|||| || || ||||| ||| | || | |||| || |||| ||||| || || |
Sbjct 155837 ACACGGGGCCGAGGTCGCCCACCTCGCGGTGCGAGAGGCCCACGCCGTCCAGGAACTCGC 155896
Query 30327 TGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGG 30386
|| |||||| ||||||||||||| || |||| ||| ||| ||| || |
Sbjct 155897 GCGACCCGTTGCCGTCCCAGATCTTGACGCCCTGCTCGCTGAGGGACAGGGACGACGTCG 155956
Query 30387 ACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCG 30446
|| ||||||||| || ||||| | | ||| ||||| || || | |||||| |
Sbjct 155957 CGCCCGAGACGAACCAGAGGAGCTCGGCGAGGACCGCCTTGTGGAACACGCGCTTGGTGG 156016
Query 30447 TGAGGAGGGG 30456
||||||| ||
Sbjct 156017 TGAGGAGCGG 156026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406298921477256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |