Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1543 123 2e-23 seq757 123 2e-23 >seq1543 Length=161075 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || ||||||||| | || ||||| || || || | || Sbjct 71713 CATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTC 71654 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | || || || ||||| ||||| || || || ||||| || || Sbjct 71653 GGATACAATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGTATCCCACCAGACCA 71594 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| ||||| || |||| || | ||| | || || ||||| Sbjct 71593 GCAGCGTCTCATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGGACACTCTCAGACTACAA 71534 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| ||||||||||| | || ||||| ||||| |||| ||||| Sbjct 71533 CATTCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTGCGTGGTGG 71486 >seq757 Length=325751 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || |||||| |||| || ||||| ||||| | || Sbjct 29833 CATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCATC 29892 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || || | ||||| ||||| || ||||| || ||||| || || || || Sbjct 29893 CGACACCATCGACAATGTCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGACCA 29952 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | || ||||| || | || ||| | ||| | ||||| ||||| Sbjct 29953 GCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAA 30012 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| |||||||| ||| | || |||| |||| |||| ||||| Sbjct 30013 CATTCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGCGTGGTGG 30060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434905798239360