Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq813 161 9e-35 >seq813 Length=186750 Score = 161 bits (178), Expect = 9e-35 Identities = 435/663 (66%), Gaps = 62/663 (9%) Strand=Plus/Plus Query 6515 CGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGCGCA 6574 || ||||| | | |||||| ||| |||| |||| ||||| || ||||| |||||| Sbjct 155371 CGCGGCTCCCTCTCCAGCTGTGTCCTGAGCGCGTCGACGTGGTCCACGTAGACATGCGCG 155430 Query 6575 TCCCCCA--ACGTATGCACCAG-CTCCCCAGGAACCA-ACCCCACGACATGAGCGATCAT 6630 || |||| |||| || ||| || ||| || || | | | ||| || || |||||||| Sbjct 155431 TCGCCCATGACGT--GCGTCAGGCTGCCC-GGCACGAGATCACAC-ACGTGCGCGATCAT 155486 Query 6631 GTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGA 6690 || || ||||| ||||| || || |||||||||||||| || | |||||||| | || Sbjct 155487 GTGTGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCGAGGCCCATGTCGCAGGA 155546 Query 6691 TCGTTGATAGAGCTGGCAGGACAG------------------CTCCCCATTCGCG----- 6727 || || || ||||||||| ||| ||| |||| | || Sbjct 155547 CCGCTGGTACAGCTGGCAGTGCAGGTGGCCCTTGGGCTTCGCCTCGCCATCCCCGCTGTC 155606 Query 6728 -------------------------ACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGA 6761 |||||||| || ||| | |||| || || || | Sbjct 155607 CTGCCCCGCCGGCCGTGGATACGATACGTAGAACTGCGCAAACA-TGTGACAGGGCGGCA 155665 Query 6762 GCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAG 6821 ||||||| | || || || ||||||||||||| ||| | ||| | | ||| | | Sbjct 155666 GCGCCATGATCTTCAGGTCTTTGGGGTTCCACGCGCTCATGATGATGCGCCGGTCGTACG 155725 Query 6822 GGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGT 6881 ||||| | | | ||| || || | | ||||||||| | ||||| |||| |||| Sbjct 155726 GGTTCGTCCTGAGCTTGTGTATGACCTCCGCCAGCTGGTCGACGCCCTGGCCCGTGTAGT 155785 Query 6882 CCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGG 6940 ||| | |||| || || ||||| ||||||||||| | ||||||||| ||||| || ||| Sbjct 155786 CCGTCCTCGCGTCCACG-TACTCGGCCCCAAAGTGGCGCCACTGGAAGCCGTACACGGGG 155844 Query 6941 CCCAAGTCGCCCTCCTCCCGAGATGGGA-ACCCCCGCTTGTCCAGAAAGTCTCGAGACCC 6999 || | ||||||| |||| || | || ||| ||| |||||| || || || ||||| Sbjct 155845 CCGAGGTCGCCCACCTCGCGGTGCGAGAGGCCCACGC-CGTCCAGGAACTCGCGCGACCC 155903 Query 7000 GTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCT 7059 || ||||||||||||| || ||| | ||| | || ||| || ||| Sbjct 155904 GTTGCCGTCCCAGATCTTGACGCCCTGCTCGCTGAGGGACAGGGACGACGTCGCGCCCGA 155963 Query 7060 CACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAG 7119 |||||||| || ||||| ||| || |||| | |||| || || || || || || Sbjct 155964 GACGAACCAGAGGAGCTCGGCGAGGACCGCCTTGTGGAACACGCGCTTGGTGGTGAGGAG 156023 Query 7120 CGG 7122 ||| Sbjct 156024 CGG 156026 Score = 161 bits (178), Expect = 9e-35 Identities = 435/663 (66%), Gaps = 62/663 (9%) Strand=Plus/Minus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 ||||| || || || || || |||| | |||| || ||| ||||| || |||||| Sbjct 156026 CCGCTCCTCACCACCAAGCGCGTGTTCCACAAGGCGGTCCTCGCCGAGCTCCTCTGGTTC 155967 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 || ||| || ||| || | ||| | ||| || ||||||||||||| Sbjct 155966 GTCTCGGGCGCGACGTCGTCCCTGTCCCTCAGCGAGCAGGGCGTCAAGATCTGGGACGGC 155907 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT-TCCCATCTCGGGAGGAGGGCGACTT 34401 ||||||| || || || |||||| ||| ||| || | || |||| ||||||| | Sbjct 155906 AACGGGTCGCGCGAGTTCCTGGACG-GCGTGGGCCTCTCGCACCGCGAGGTGGGCGACCT 155848 Query 34402 GGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAG- 34460 ||||| || ||||| ||||||||| | ||||||||||| ||||| || || |||| | Sbjct 155847 CGGCCCCGTGTACGGCTTCCAGTGGCGCCACTTTGGGGCCGAGTA-CGTGGACGCGAGGA 155789 Query 34461 CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGA 34520 ||||||| |||| ||||| | ||||||||| | | || || ||| | | | || Sbjct 155788 CGGACTACACGGGCCAGGGCGTCGACCAGCTGGCGGAGGTCATACACAAGCTCAGGACGA 155729 Query 34521 ACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGG 34580 |||| | ||| | | ||| | ||| ||||||||||||| || || || | |||| Sbjct 155728 ACCCGTACGACCGGCGCATCATCATGAGCGCGTGGAACCCCAAAGACCTGAAGATCATGG 155669 Query 34581 CGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGT---------------------- 34617 |||| || || || |||| | ||| || |||||||| Sbjct 155668 CGCTGCCGCCCTGTCACA-TGTTTGCGCAGTTCTACGTATCGTATCCACGGCCGGCGGGG 155610 Query 34618 --------CGCGAATGGGGAG------------------CTGTCCTGCCAGCTCTATCAA 34651 || | |||| ||| ||| ||||||||| || || Sbjct 155609 CAGGACAGCGGGGATGGCGAGGCGAAGCCCAAGGGCCACCTGCACTGCCAGCTGTACCAG 155550 Query 34652 CGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACG 34711 || || | |||||||| | || |||||||||||||| || || ||||| ||||| || Sbjct 155549 CGGTCCTGCGACATGGGCCTCGGCGTGCCGTTCAACATCGCCAGCTACGCGCTGCTGACA 155490 Query 34712 TACATGATCGCTCATGTCGTGGGGT-TGGTTCCTGGGGAG-CTGGTGCATACGT--TGGG 34767 |||||||||| || || ||| | | | || || ||| || ||| || |||| |||| Sbjct 155489 CACATGATCGCGCACGT-GTGTGATCTCGTGCC-GGGCAGCCTGACGC--ACGTCATGGG 155434 Query 34768 GGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCC 34827 || |||||| ||||| || ||||| |||| |||| ||| |||||| | | ||||| Sbjct 155433 CGACGCGCATGTCTACGTGGACCACGTCGACGCGCTCAGGACACAGCTGGAGAGGGAGCC 155374 Query 34828 CCG 34830 || Sbjct 155373 GCG 155371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448249411596960