Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq813 161 9e-35
>seq813
Length=186750
Score = 161 bits (178), Expect = 9e-35
Identities = 435/663 (66%), Gaps = 62/663 (9%)
Strand=Plus/Plus
Query 6515 CGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGCGCA 6574
|| ||||| | | |||||| ||| |||| |||| ||||| || ||||| ||||||
Sbjct 155371 CGCGGCTCCCTCTCCAGCTGTGTCCTGAGCGCGTCGACGTGGTCCACGTAGACATGCGCG 155430
Query 6575 TCCCCCA--ACGTATGCACCAG-CTCCCCAGGAACCA-ACCCCACGACATGAGCGATCAT 6630
|| |||| |||| || ||| || ||| || || | | | ||| || || ||||||||
Sbjct 155431 TCGCCCATGACGT--GCGTCAGGCTGCCC-GGCACGAGATCACAC-ACGTGCGCGATCAT 155486
Query 6631 GTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGA 6690
|| || ||||| ||||| || || |||||||||||||| || | |||||||| | ||
Sbjct 155487 GTGTGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCGAGGCCCATGTCGCAGGA 155546
Query 6691 TCGTTGATAGAGCTGGCAGGACAG------------------CTCCCCATTCGCG----- 6727
|| || || ||||||||| ||| ||| |||| | ||
Sbjct 155547 CCGCTGGTACAGCTGGCAGTGCAGGTGGCCCTTGGGCTTCGCCTCGCCATCCCCGCTGTC 155606
Query 6728 -------------------------ACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGA 6761
|||||||| || ||| | |||| || || || |
Sbjct 155607 CTGCCCCGCCGGCCGTGGATACGATACGTAGAACTGCGCAAACA-TGTGACAGGGCGGCA 155665
Query 6762 GCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAG 6821
||||||| | || || || ||||||||||||| ||| | ||| | | ||| | |
Sbjct 155666 GCGCCATGATCTTCAGGTCTTTGGGGTTCCACGCGCTCATGATGATGCGCCGGTCGTACG 155725
Query 6822 GGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGT 6881
||||| | | | ||| || || | | ||||||||| | ||||| |||| ||||
Sbjct 155726 GGTTCGTCCTGAGCTTGTGTATGACCTCCGCCAGCTGGTCGACGCCCTGGCCCGTGTAGT 155785
Query 6882 CCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGG 6940
||| | |||| || || ||||| ||||||||||| | ||||||||| ||||| || |||
Sbjct 155786 CCGTCCTCGCGTCCACG-TACTCGGCCCCAAAGTGGCGCCACTGGAAGCCGTACACGGGG 155844
Query 6941 CCCAAGTCGCCCTCCTCCCGAGATGGGA-ACCCCCGCTTGTCCAGAAAGTCTCGAGACCC 6999
|| | ||||||| |||| || | || ||| ||| |||||| || || || |||||
Sbjct 155845 CCGAGGTCGCCCACCTCGCGGTGCGAGAGGCCCACGC-CGTCCAGGAACTCGCGCGACCC 155903
Query 7000 GTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCT 7059
|| ||||||||||||| || ||| | ||| | || ||| || |||
Sbjct 155904 GTTGCCGTCCCAGATCTTGACGCCCTGCTCGCTGAGGGACAGGGACGACGTCGCGCCCGA 155963
Query 7060 CACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAG 7119
|||||||| || ||||| ||| || |||| | |||| || || || || || ||
Sbjct 155964 GACGAACCAGAGGAGCTCGGCGAGGACCGCCTTGTGGAACACGCGCTTGGTGGTGAGGAG 156023
Query 7120 CGG 7122
|||
Sbjct 156024 CGG 156026
Score = 161 bits (178), Expect = 9e-35
Identities = 435/663 (66%), Gaps = 62/663 (9%)
Strand=Plus/Minus
Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282
||||| || || || || || |||| | |||| || ||| ||||| || ||||||
Sbjct 156026 CCGCTCCTCACCACCAAGCGCGTGTTCCACAAGGCGGTCCTCGCCGAGCTCCTCTGGTTC 155967
Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342
|| ||| || ||| || | ||| | ||| || |||||||||||||
Sbjct 155966 GTCTCGGGCGCGACGTCGTCCCTGTCCCTCAGCGAGCAGGGCGTCAAGATCTGGGACGGC 155907
Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT-TCCCATCTCGGGAGGAGGGCGACTT 34401
||||||| || || || |||||| ||| ||| || | || |||| ||||||| |
Sbjct 155906 AACGGGTCGCGCGAGTTCCTGGACG-GCGTGGGCCTCTCGCACCGCGAGGTGGGCGACCT 155848
Query 34402 GGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAG- 34460
||||| || ||||| ||||||||| | ||||||||||| ||||| || || |||| |
Sbjct 155847 CGGCCCCGTGTACGGCTTCCAGTGGCGCCACTTTGGGGCCGAGTA-CGTGGACGCGAGGA 155789
Query 34461 CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGA 34520
||||||| |||| ||||| | ||||||||| | | || || ||| | | | ||
Sbjct 155788 CGGACTACACGGGCCAGGGCGTCGACCAGCTGGCGGAGGTCATACACAAGCTCAGGACGA 155729
Query 34521 ACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGG 34580
|||| | ||| | | ||| | ||| ||||||||||||| || || || | ||||
Sbjct 155728 ACCCGTACGACCGGCGCATCATCATGAGCGCGTGGAACCCCAAAGACCTGAAGATCATGG 155669
Query 34581 CGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGT---------------------- 34617
|||| || || || |||| | ||| || ||||||||
Sbjct 155668 CGCTGCCGCCCTGTCACA-TGTTTGCGCAGTTCTACGTATCGTATCCACGGCCGGCGGGG 155610
Query 34618 --------CGCGAATGGGGAG------------------CTGTCCTGCCAGCTCTATCAA 34651
|| | |||| ||| ||| ||||||||| || ||
Sbjct 155609 CAGGACAGCGGGGATGGCGAGGCGAAGCCCAAGGGCCACCTGCACTGCCAGCTGTACCAG 155550
Query 34652 CGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACG 34711
|| || | |||||||| | || |||||||||||||| || || ||||| ||||| ||
Sbjct 155549 CGGTCCTGCGACATGGGCCTCGGCGTGCCGTTCAACATCGCCAGCTACGCGCTGCTGACA 155490
Query 34712 TACATGATCGCTCATGTCGTGGGGT-TGGTTCCTGGGGAG-CTGGTGCATACGT--TGGG 34767
|||||||||| || || ||| | | | || || ||| || ||| || |||| ||||
Sbjct 155489 CACATGATCGCGCACGT-GTGTGATCTCGTGCC-GGGCAGCCTGACGC--ACGTCATGGG 155434
Query 34768 GGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCC 34827
|| |||||| ||||| || ||||| |||| |||| ||| |||||| | | |||||
Sbjct 155433 CGACGCGCATGTCTACGTGGACCACGTCGACGCGCTCAGGACACAGCTGGAGAGGGAGCC 155374
Query 34828 CCG 34830
||
Sbjct 155373 GCG 155371
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448249411596960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |