Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq757 98.7 7e-16
seq1543 95.1 8e-15
>seq757
Length=325751
Score = 98.7 bits (108), Expect = 7e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||||||||| || || ||||| || || || || || |
Sbjct 29834 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCATCC 29893
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | ||||| ||||| || || | || ||||| ||
Sbjct 29894 GACACCATCGACAATGTCAAGGC-CAAAATCCAGGACAAGGAGGGCATCCCCCCAGACCA 29952
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| | || ||||| ||||| || || || |||| ||||| | ||| |||||
Sbjct 29953 GCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAA 30012
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||||||
Sbjct 30013 CATTCAGAAGGAGTCCAC 30030
>seq1543
Length=161075
Score = 95.1 bits (104), Expect = 8e-15
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || |||||||| || || || ||||||||||| || || || ||
Sbjct 71712 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCG 71653
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || |||| | | || || ||| ||||| || ||| | || ||||| ||
Sbjct 71652 GATACAATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAG 71593
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || || || ||||| || ||||| || | || || | || ||||||
Sbjct 71592 CAGCGTCTCATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGGACACTCTCAGACTACAAC 71533
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || ||||| ||
Sbjct 71532 ATTCAGAAGGAGTCGAC 71516
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338000051017544
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |