Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1543 131 4e-25 seq757 131 4e-25 seq1759 120 7e-22 seq2236 98.7 2e-15 seq1933 84.2 5e-11 >seq1543 Length=161075 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||||||||| || || || |||| ||||| |||| | || | || || Sbjct 71729 AGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCC 71788 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || || || ||||| || || ||||| |||||||| Sbjct 71789 TCGAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTGTCC 71848 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| ||||||||||| |||| || || || | ||||| ||| Sbjct 71849 TGAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTC 71908 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | ||||| Sbjct 71909 TTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 71940 Score = 118 bits (130), Expect = 3e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| || || |||| ||||| |||| | || | || || Sbjct 71957 AGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 72016 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || || || || ||||| || || || || |||||||| Sbjct 72017 TCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 72076 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| ||||||||||| |||| || || || | ||||| ||| Sbjct 72077 TGAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTC 72136 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || | || || | ||| | ||||| || Sbjct 72137 TTGCCGGTGAGGGTCTTGACGAAGATCTGCATCTT 72171 >seq757 Length=325751 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| ||||| || ||||| || || || | ||||| |||| || || Sbjct 30055 ACGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGT 29996 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||| ||||| || || || ||||| || || || || Sbjct 29995 GCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCC 29936 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| ||||| || ||| ||| ||||||||||| || | ||||| || | Sbjct 29935 CTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGATGACTCCACCTCAAG 29876 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||||||||| | || || | ||| | ||||| Sbjct 29875 GGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 29834 >seq1759 Length=81252 Score = 120 bits (132), Expect = 7e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | ||| | ||||| || |||||||| || |||||||| Sbjct 66847 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 66906 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||| || ||||| || ||||| || |||||||| |||||||| ||| || ||| Sbjct 66907 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCG 66966 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||||||| || | ||||| || | ||||| ||||||||||||| || || | ||| Sbjct 66967 ATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAA 67025 >seq2236 Length=5106 Score = 98.7 bits (108), Expect = 2e-15 Identities = 172/246 (70%), Gaps = 7/246 (3%) Strand=Plus/Minus Query 7488 ATTTTCTATGATTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATAT-TGAGTGGT 7545 ||||||| | | ||||| ||||||||| | | || ||| ||| |||| | || | Sbjct 5099 ATTTTCTGTATTAATAAGATTAGAATTATCAGGACCAGGTGTACAATATATATCAGA--T 5042 Query 7546 AATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTT 7605 ||| ||| | || || ||| || || || || || || | |||||||||||| | Sbjct 5041 AAT---CAATTATATAATAGTATCATAACAGCACACGCTATTATGATGATTTTCTTTATG 4985 Query 7606 GTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCT 7665 |||||||| | | | ||||| ||||| || |||| || | || ||| | | || | | Sbjct 4984 GTTATGCCAGCTTTAATAGGTGGTTTTGGTAATTTCTTATTACCATTATTAGTAGGAGGT 4925 Query 7666 CCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 || |||||||| || ||||| | || ||||||||||| |||||| || ||| ||| Sbjct 4924 CCAGATATGGCATTCCCAAGATTAAATAATATAAGTTTCTGATTATTAGTGCCAAGTTTA 4865 Query 7726 TTTCTA 7731 ||| || Sbjct 4864 TTTTTA 4859 >seq1933 Length=42650 Score = 84.2 bits (92), Expect = 5e-11 Identities = 181/267 (68%), Gaps = 8/267 (3%) Strand=Plus/Plus Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGT---CTTTGTAGACGATGAAGGGCATGCCCACC 193556 ||||||||| |||| || | |||||| | ||||| | ||||| || |||| | Sbjct 26293 TTCTGGTTGCTCTTGCG---GTTGGCGTGGTCCTTGTACAGCATGAATGGGTTGCCGGTC 26349 Query 193557 TCCGCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCC 193616 || | || || |||| ||| || ||| || | || || |||| ||| |||||||| Sbjct 26350 TCGGTCTGCGCCTCGAGGATGGCATACCACAGCTTCTGTGCCTTCAAGGTC-TTCTGGCC 26408 Query 193617 TTT-CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTC 193675 || || | ||| ||||| ||||||| |||| || || | |||||| ||| | Sbjct 26409 GCGACCCTCGCGCTCATACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGC 26468 Query 193676 GAGACCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTT 193735 || |||||| || || ||||| | || |||| || || | | ||||| | ||| Sbjct 26469 CAGGCCGGGACACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTT 26528 Query 193736 CATGAAGAGGTCAGATGTCCAAATGGC 193762 ||||||||| |||| |||| | ||| Sbjct 26529 CATGAAGAGATCAGGGATCCAGAGGGC 26555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192495782568692