Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq1543 131 4e-25
seq757 131 4e-25
seq1759 120 7e-22
seq2236 98.7 2e-15
seq1933 84.2 5e-11
>seq1543
Length=161075
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| ||||||||||| || || || |||| ||||| |||| | || | || ||
Sbjct 71729 AGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCC 71788
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||| ||||| || || || ||||| || || ||||| ||||||||
Sbjct 71789 TCGAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTGTCC 71848
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| |||||| ||||||||||| |||| || || || | ||||| |||
Sbjct 71849 TGAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTC 71908
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | || || | ||| | |||||
Sbjct 71909 TTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 71940
Score = 118 bits (130), Expect = 3e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| ||||| || ||||| || || |||| ||||| |||| | || | || ||
Sbjct 71957 AGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 72016
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || ||||| || || || || ||||| || || || || ||||||||
Sbjct 72017 TCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 72076
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| |||||| ||||||||||| |||| || || || | ||||| |||
Sbjct 72077 TGAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTC 72136
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| || | || || | ||| | ||||| ||
Sbjct 72137 TTGCCGGTGAGGGTCTTGACGAAGATCTGCATCTT 72171
>seq757
Length=325751
Score = 131 bits (144), Expect = 4e-25
Identities = 162/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | |||||| ||||| || ||||| || || || | ||||| |||| || ||
Sbjct 30055 ACGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGT 29996
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| ||||| ||||| || || || ||||| || || || ||
Sbjct 29995 GCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCC 29936
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| ||||| || ||| ||| ||||||||||| || | ||||| || |
Sbjct 29935 CTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGATGACTCCACCTCAAG 29876
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||||||||| | || || | ||| | |||||
Sbjct 29875 GGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 29834
>seq1759
Length=81252
Score = 120 bits (132), Expect = 7e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||| |||| | ||| | ||||| || |||||||| || ||||||||
Sbjct 66847 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 66906
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
| ||| || ||||| || ||||| || |||||||| |||||||| ||| || |||
Sbjct 66907 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCG 66966
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704
|||||||| || | ||||| || | ||||| ||||||||||||| || || | |||
Sbjct 66967 ATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAA 67025
>seq2236
Length=5106
Score = 98.7 bits (108), Expect = 2e-15
Identities = 172/246 (70%), Gaps = 7/246 (3%)
Strand=Plus/Minus
Query 7488 ATTTTCTATGATTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATAT-TGAGTGGT 7545
||||||| | | ||||| ||||||||| | | || ||| ||| |||| | || |
Sbjct 5099 ATTTTCTGTATTAATAAGATTAGAATTATCAGGACCAGGTGTACAATATATATCAGA--T 5042
Query 7546 AATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTT 7605
||| ||| | || || ||| || || || || || || | |||||||||||| |
Sbjct 5041 AAT---CAATTATATAATAGTATCATAACAGCACACGCTATTATGATGATTTTCTTTATG 4985
Query 7606 GTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCT 7665
|||||||| | | | ||||| ||||| || |||| || | || ||| | | || | |
Sbjct 4984 GTTATGCCAGCTTTAATAGGTGGTTTTGGTAATTTCTTATTACCATTATTAGTAGGAGGT 4925
Query 7666 CCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725
|| |||||||| || ||||| | || ||||||||||| |||||| || ||| |||
Sbjct 4924 CCAGATATGGCATTCCCAAGATTAAATAATATAAGTTTCTGATTATTAGTGCCAAGTTTA 4865
Query 7726 TTTCTA 7731
||| ||
Sbjct 4864 TTTTTA 4859
>seq1933
Length=42650
Score = 84.2 bits (92), Expect = 5e-11
Identities = 181/267 (68%), Gaps = 8/267 (3%)
Strand=Plus/Plus
Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGT---CTTTGTAGACGATGAAGGGCATGCCCACC 193556
||||||||| |||| || | |||||| | ||||| | ||||| || |||| |
Sbjct 26293 TTCTGGTTGCTCTTGCG---GTTGGCGTGGTCCTTGTACAGCATGAATGGGTTGCCGGTC 26349
Query 193557 TCCGCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCC 193616
|| | || || |||| ||| || ||| || | || || |||| ||| ||||||||
Sbjct 26350 TCGGTCTGCGCCTCGAGGATGGCATACCACAGCTTCTGTGCCTTCAAGGTC-TTCTGGCC 26408
Query 193617 TTT-CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTC 193675
|| || | ||| ||||| ||||||| |||| || || | |||||| ||| |
Sbjct 26409 GCGACCCTCGCGCTCATACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGC 26468
Query 193676 GAGACCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTT 193735
|| |||||| || || ||||| | || |||| || || | | ||||| | |||
Sbjct 26469 CAGGCCGGGACACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTT 26528
Query 193736 CATGAAGAGGTCAGATGTCCAAATGGC 193762
||||||||| |||| |||| | |||
Sbjct 26529 CATGAAGAGATCAGGGATCCAGAGGGC 26555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192495782568692
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |