Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq813 136 3e-27
>seq813
Length=186750
Score = 136 bits (150), Expect = 3e-27
Identities = 424/670 (63%), Gaps = 56/670 (8%)
Strand=Plus/Plus
Query 29611 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTA 29670
||||||| | ||||||||||| ||||| |||| |||| || |||||||| | |||
Sbjct 155361 GGGAAAGTCGCGCGGCTCCCTCTCCAGCTGTGTCCTGAGCGCGTCGACGTGGTCCACGTA 155420
Query 29671 GACGTGAGCATCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729
||| || || || |||| | ||| | || || ||||| | || | ||||| |
Sbjct 155421 GACATGCGCGTCGCCCATGACGTGCGTCAGGCTG-CCCGGCACGAGATCACACACGTGCG 155479
Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789
| ||||||| || || || | ||||||||||||||| || ||||| ||||| |||||||
Sbjct 155480 CGATCATGTGTGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCGAGGCCCATGT 155539
Query 29790 CCCCTGACCTCTGGTAGAGCTGGCA------------CGAGAGCT----CTC-----CGT 29828
| | |||| |||||| |||||||| | | ||| ||| |
Sbjct 155540 CGCAGGACCGCTGGTACAGCTGGCAGTGCAGGTGGCCCTTGGGCTTCGCCTCGCCATCCC 155599
Query 29829 CGCT---------------------------CACGTAAAACTG---ACACATGGCATGGC 29858
|||| ||||| ||||| | ||||| || |
Sbjct 155600 CGCTGTCCTGCCCCGCCGGCCGTGGATACGATACGTAGAACTGCGCAAACATG---TGAC 155656
Query 29859 ACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCC 29918
| || || || ||||||| || ||||||||||||||| || | || |||||||||||
Sbjct 155657 AGGGCGGCAGCGCCATGATCTTCAGGTCTTTGGGGTTCCACGCGCTCATGATGATGCGCC 155716
Query 29919 TGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCC 29978
||| | ||||| |||||| || | | | | |||||| || || ||| |
Sbjct 155717 GGTCGTACGGGTTCGTCCTGAGCTTGTGTATGACCTCCGCCAGCTGGTCGACGCCCTGGC 155776
Query 29979 CCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGT 30038
||| |||||| | | || || | ||||||||| ||||
Sbjct 155777 CCGTGTAGTCCGTCCTCGCGTCCACGTACTCGGCCCCAAAGTGGCGCCACTGGAAGCCGT 155836
Query 30039 ACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTC 30098
|||| || || ||||| ||| | || | |||| || |||| ||||| || || |
Sbjct 155837 ACACGGGGCCGAGGTCGCCCACCTCGCGGTGCGAGAGGCCCACGCCGTCCAGGAACTCGC 155896
Query 30099 TGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGG 30158
|| |||||| ||||||||||||| || |||| |||| ||| ||| || |
Sbjct 155897 GCGACCCGTTGCCGTCCCAGATCTTGACGCCCTGCTCGCTGAGGGACAGGGACGACGTCG 155956
Query 30159 ACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCG 30218
|| ||||||||| || ||||| | | ||| ||||| || || | |||||| |
Sbjct 155957 CGCCCGAGACGAACCAGAGGAGCTCGGCGAGGACCGCCTTGTGGAACACGCGCTTGGTGG 156016
Query 30219 TGAGGAGGGG 30228
||||||| ||
Sbjct 156017 TGAGGAGCGG 156026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406151725635748
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |