Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq813 136 3e-27 >seq813 Length=186750 Score = 136 bits (150), Expect = 3e-27 Identities = 424/670 (63%), Gaps = 56/670 (8%) Strand=Plus/Plus Query 29611 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTA 29670 ||||||| | ||||||||||| ||||| |||| |||| || |||||||| | ||| Sbjct 155361 GGGAAAGTCGCGCGGCTCCCTCTCCAGCTGTGTCCTGAGCGCGTCGACGTGGTCCACGTA 155420 Query 29671 GACGTGAGCATCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 ||| || || || |||| | ||| | || || ||||| | || | ||||| | Sbjct 155421 GACATGCGCGTCGCCCATGACGTGCGTCAGGCTG-CCCGGCACGAGATCACACACGTGCG 155479 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789 | ||||||| || || || | ||||||||||||||| || ||||| ||||| ||||||| Sbjct 155480 CGATCATGTGTGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCGAGGCCCATGT 155539 Query 29790 CCCCTGACCTCTGGTAGAGCTGGCA------------CGAGAGCT----CTC-----CGT 29828 | | |||| |||||| |||||||| | | ||| ||| | Sbjct 155540 CGCAGGACCGCTGGTACAGCTGGCAGTGCAGGTGGCCCTTGGGCTTCGCCTCGCCATCCC 155599 Query 29829 CGCT---------------------------CACGTAAAACTG---ACACATGGCATGGC 29858 |||| ||||| ||||| | ||||| || | Sbjct 155600 CGCTGTCCTGCCCCGCCGGCCGTGGATACGATACGTAGAACTGCGCAAACATG---TGAC 155656 Query 29859 ACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCC 29918 | || || || ||||||| || ||||||||||||||| || | || ||||||||||| Sbjct 155657 AGGGCGGCAGCGCCATGATCTTCAGGTCTTTGGGGTTCCACGCGCTCATGATGATGCGCC 155716 Query 29919 TGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCC 29978 ||| | ||||| |||||| || | | | | |||||| || || ||| | Sbjct 155717 GGTCGTACGGGTTCGTCCTGAGCTTGTGTATGACCTCCGCCAGCTGGTCGACGCCCTGGC 155776 Query 29979 CCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGT 30038 ||| |||||| | | || || | ||||||||| |||| Sbjct 155777 CCGTGTAGTCCGTCCTCGCGTCCACGTACTCGGCCCCAAAGTGGCGCCACTGGAAGCCGT 155836 Query 30039 ACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTC 30098 |||| || || ||||| ||| | || | |||| || |||| ||||| || || | Sbjct 155837 ACACGGGGCCGAGGTCGCCCACCTCGCGGTGCGAGAGGCCCACGCCGTCCAGGAACTCGC 155896 Query 30099 TGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGG 30158 || |||||| ||||||||||||| || |||| |||| ||| ||| || | Sbjct 155897 GCGACCCGTTGCCGTCCCAGATCTTGACGCCCTGCTCGCTGAGGGACAGGGACGACGTCG 155956 Query 30159 ACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCG 30218 || ||||||||| || ||||| | | ||| ||||| || || | |||||| | Sbjct 155957 CGCCCGAGACGAACCAGAGGAGCTCGGCGAGGACCGCCTTGTGGAACACGCGCTTGGTGG 156016 Query 30219 TGAGGAGGGG 30228 ||||||| || Sbjct 156017 TGAGGAGCGG 156026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406151725635748