Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq1933 136 6e-27
seq1567 87.8 3e-12
>seq1933
Length=42650
Score = 136 bits (150), Expect = 6e-27
Identities = 387/591 (65%), Gaps = 14/591 (2%)
Strand=Plus/Plus
Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609
|| ||||| || || || ||||| | | ||| || || | | || || || |||||
Sbjct 26473 CCGGGACACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTTCATG 26532
Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669
||||||||||| ||||| || || | || || || || | | ||||| |||||
Sbjct 26533 AAGAGATCAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCG 26592
Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729
||||| || || |||||||| | | ||||| ||||| || || || || ||
Sbjct 26593 TGGTTCTTGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATG 26652
Query 76730 GCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAA 76789
|| | |||| || || || || || ||||| || | || | |||||||| || |
Sbjct 26653 GCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAG 26712
Query 76790 ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCA 76849
|| | || ||| || || ||||| ||||| || || || || || | |||||| |||
Sbjct 26713 ACACGCAGCATGGGGATGATGCCATTAGACGTGCCGTTGGTGCCGGCAATATAGGAGCCA 26772
Query 76850 CATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 76909
||||| || | | || || || ||||| ||||| || ||||| | |||
Sbjct 26773 GTGGCACGGATGCGGTGGACATTGAGACCAATGCCTCCGGCCATCTTGGAGATCATGGCA 26832
Query 76910 CAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAA 76969
||| || | ||||||||||| ||||| || ||||| ||| |||||| | || ||
Sbjct 26833 CAGGTCTTGAGGGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCCACTAGGAAG 26892
Query 76970 CAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTG 77029
|| |||| || ||| || || || || || | || || || || || |||
Sbjct 26893 CACGATGACAGCTGTGCCTGAGGCGTGCCGGCGTTGAATAGAGTCGGCGAAGCGTGTGTG 26952
Query 77030 AACCATTTTTCAGA-AAGTAGATTGTATGTTTCAATAACTGCTTCTATAT------CCCA 77082
|| | || | || | |||| ||||| || || | ||| || || | ||||
Sbjct 26953 AAGAACTTGTTGGAGAGGTAG-TTGTAGGTCTCCAGAACCCTCTCGATGTTGTCTCCCCA 27011
Query 77083 TTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTAC 77133
|||| || || ||||||||||||| ||| ||||| || || || ||
Sbjct 27012 --GATG----CCAACGGCGACACGCATCAGCATGTGCTGTGGCCGCTCGAC 27056
>seq1567
Length=91444
Score = 87.8 bits (96), Expect = 3e-12
Identities = 120/167 (72%), Gaps = 3/167 (2%)
Strand=Plus/Minus
Query 46672 TCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCG 46731
||||| || || || || |||||||| || |||||||| |||||||| || || | |||
Sbjct 45264 TCGTTGGAGAAGGTCAGACCAGGCATCAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCG 45205
Query 46732 AAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA 46791
|| | || ||||| || || || || || |||||||||||||| | || ||||
Sbjct 45204 AAGGCGCCGCTGAAGAAGATACCCTCGACGGCAGCGAATGCGACAAGGCGCTGCGCGTAG 45145
Query 46792 CTGGCATC---ATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTT 46835
||| || | || |||||||| ||||||| || ||||| ||
Sbjct 45144 GTGGACTCCCGGTCCTGGATCCACCTCAGAGCCCAGTCGGCCTTCTT 45098
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712913742725760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |