Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1933 136 6e-27 seq1567 87.8 3e-12 >seq1933 Length=42650 Score = 136 bits (150), Expect = 6e-27 Identities = 387/591 (65%), Gaps = 14/591 (2%) Strand=Plus/Plus Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609 || ||||| || || || ||||| | | ||| || || | | || || || ||||| Sbjct 26473 CCGGGACACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTTCATG 26532 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 ||||||||||| ||||| || || | || || || || | | ||||| ||||| Sbjct 26533 AAGAGATCAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCG 26592 Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729 ||||| || || |||||||| | | ||||| ||||| || || || || || Sbjct 26593 TGGTTCTTGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATG 26652 Query 76730 GCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAA 76789 || | |||| || || || || || ||||| || | || | |||||||| || | Sbjct 26653 GCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAG 26712 Query 76790 ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCA 76849 || | || ||| || || ||||| ||||| || || || || || | |||||| ||| Sbjct 26713 ACACGCAGCATGGGGATGATGCCATTAGACGTGCCGTTGGTGCCGGCAATATAGGAGCCA 26772 Query 76850 CATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 76909 ||||| || | | || || || ||||| ||||| || ||||| | ||| Sbjct 26773 GTGGCACGGATGCGGTGGACATTGAGACCAATGCCTCCGGCCATCTTGGAGATCATGGCA 26832 Query 76910 CAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAA 76969 ||| || | ||||||||||| ||||| || ||||| ||| |||||| | || || Sbjct 26833 CAGGTCTTGAGGGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCCACTAGGAAG 26892 Query 76970 CAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTG 77029 || |||| || ||| || || || || || | || || || || || ||| Sbjct 26893 CACGATGACAGCTGTGCCTGAGGCGTGCCGGCGTTGAATAGAGTCGGCGAAGCGTGTGTG 26952 Query 77030 AACCATTTTTCAGA-AAGTAGATTGTATGTTTCAATAACTGCTTCTATAT------CCCA 77082 || | || | || | |||| ||||| || || | ||| || || | |||| Sbjct 26953 AAGAACTTGTTGGAGAGGTAG-TTGTAGGTCTCCAGAACCCTCTCGATGTTGTCTCCCCA 27011 Query 77083 TTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTAC 77133 |||| || || ||||||||||||| ||| ||||| || || || || Sbjct 27012 --GATG----CCAACGGCGACACGCATCAGCATGTGCTGTGGCCGCTCGAC 27056 >seq1567 Length=91444 Score = 87.8 bits (96), Expect = 3e-12 Identities = 120/167 (72%), Gaps = 3/167 (2%) Strand=Plus/Minus Query 46672 TCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCG 46731 ||||| || || || || |||||||| || |||||||| |||||||| || || | ||| Sbjct 45264 TCGTTGGAGAAGGTCAGACCAGGCATCAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCG 45205 Query 46732 AAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA 46791 || | || ||||| || || || || || |||||||||||||| | || |||| Sbjct 45204 AAGGCGCCGCTGAAGAAGATACCCTCGACGGCAGCGAATGCGACAAGGCGCTGCGCGTAG 45145 Query 46792 CTGGCATC---ATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTT 46835 ||| || | || |||||||| ||||||| || ||||| || Sbjct 45144 GTGGACTCCCGGTCCTGGATCCACCTCAGAGCCCAGTCGGCCTTCTT 45098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712913742725760