Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1543 120 7e-22 seq757 116 9e-21 seq1759 91.5 3e-13 >seq1543 Length=161075 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || ||||| || ||||| || ||||||||||| |||| | || | || || Sbjct 71956 GAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTC 72015 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || |||||||| || || | ||||||||| | | ||| || ||||| || Sbjct 72016 CTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTC 72075 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || || || | || | | |||| || ||| || |||||||| || || Sbjct 72076 CTGAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGT 72135 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| ||||| ||||| ||||||| |||||| || Sbjct 72136 CTTGCCGGTGAGGGTCTTGACGAAGATCTGCATCTT 72171 Score = 111 bits (122), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || ||||||||||| || ||||||||||| |||| | || | || || Sbjct 71729 AGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCC 71788 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || ||||| || | ||||||||| | | ||| || ||||| | Sbjct 71789 TCGAGCTGCTTT--CCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTGT 71846 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | ||||| || || || | || | | |||| || ||| || || || || || | Sbjct 71847 CCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGG 71906 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||| ||||| ||||||| |||||| Sbjct 71907 TCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 71940 >seq757 Length=325751 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || || |||||||| |||| | || | || || Sbjct 30045 AGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCC 29986 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| || | ||||||||| | | ||| || ||||| || Sbjct 29985 TCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 29926 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| |||||| | || | | |||| || ||| || ||||| || ||||| Sbjct 29925 TGGATTTTGGCCTTGACATTGTCGATGGTGTCGGATGACTCCACCTCAAGGGTGATAGTC 29866 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||||| ||||| ||||||| |||||| Sbjct 29865 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 29834 >seq1759 Length=81252 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| | ||| | ||||| || || || ||||||||||| Sbjct 66847 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 66906 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 | | ||||||||| | | || || ||||| || || || || || || | || Sbjct 66907 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCG 66966 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | | |||| ||| ||| || || || || ||||| |||||||| || |||||||||||| Sbjct 66967 ATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAG 67026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153786532243378