Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq1543 120 7e-22
seq757 116 9e-21
seq1759 91.5 3e-13
>seq1543
Length=161075
Score = 120 bits (132), Expect = 7e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| || ||||| || ||||| || ||||||||||| |||| | || | || ||
Sbjct 71956 GAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTC 72015
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || |||||||| || || | ||||||||| | | ||| || ||||| ||
Sbjct 72016 CTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTC 72075
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
||||| || || || | || | | |||| || ||| || |||||||| || ||
Sbjct 72076 CTGAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGT 72135
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
||||| ||||| ||||| ||||||| |||||| ||
Sbjct 72136 CTTGCCGGTGAGGGTCTTGACGAAGATCTGCATCTT 72171
Score = 111 bits (122), Expect = 4e-19
Identities = 154/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| || || ||||||||||| || ||||||||||| |||| | || | || ||
Sbjct 71729 AGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCC 71788
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| || || ||||| || | ||||||||| | | ||| || ||||| |
Sbjct 71789 TCGAGCTGCTTT--CCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTGT 71846
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| ||||| || || || | || | | |||| || ||| || || || || || |
Sbjct 71847 CCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGG 71906
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| ||||| ||||| ||||| ||||||| ||||||
Sbjct 71907 TCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 71940
>seq757
Length=325751
Score = 116 bits (128), Expect = 9e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| || || || || ||||| || || |||||||| |||| | || | || ||
Sbjct 30045 AGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCC 29986
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| || | ||||||||| | | ||| || ||||| ||
Sbjct 29985 TCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 29926
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| ||||| |||||| | || | | |||| || ||| || ||||| || |||||
Sbjct 29925 TGGATTTTGGCCTTGACATTGTCGATGGTGTCGGATGACTCCACCTCAAGGGTGATAGTC 29866
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||||||||| ||||| ||||||| ||||||
Sbjct 29865 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 29834
>seq1759
Length=81252
Score = 91.5 bits (100), Expect = 3e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976
|| ||||||||||| |||| | ||| | ||||| || || || |||||||||||
Sbjct 66847 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 66906
Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036
| | ||||||||| | | || || ||||| || || || || || || | ||
Sbjct 66907 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCG 66966
Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096
| | |||| ||| ||| || || || || ||||| |||||||| || ||||||||||||
Sbjct 66967 ATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAG 67026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153786532243378
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |