Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1543 152 4e-32 seq757 149 5e-31 seq1759 125 5e-24 >seq1543 Length=161075 Score = 152 bits (168), Expect = 4e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||||||||| ||| |||||| ||||||||||| |||| ||| ||| |||| || Sbjct 71960 ACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 72019 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| || |||| |||||||| || | ||| | || ||||| ||| Sbjct 72020 AGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGA 72079 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | |||||||||| ||| || ||||| | || || ||||| Sbjct 72080 ATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTG 72139 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||||||| |||||||| ||||| Sbjct 72140 CCGGTGAGGGTCTTGACGAAGATCTGCAT 72168 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| |||| ||| || |||| || Sbjct 71732 ACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCG 71791 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | |||||||| |||| || | ||| ||||| ||| Sbjct 71792 AGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGA 71851 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | |||||||||| ||| || ||||| | || || ||||| Sbjct 71852 ATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTG 71911 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| |||||||| ||||| Sbjct 71912 CCGGTGAGCGTCTTGACGAAGATCTGCAT 71940 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| || | ||| | || ||||| ||| ||||| |||||| || |||||||| || | Sbjct 71485 TCCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCTGA 71544 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 |||| || | || ||||||||||| || || ||||| | ||||||||| |||| || Sbjct 71545 GAGTGTCCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCTGGTGG 71604 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCAC 44289 | ||| ||||| ||| ||||| ||||| | | || || || | || || || Sbjct 71605 GATACCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATTGTATCCGAAGACTCGAC 71664 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| | || || ||||| || ||||||||||| |||||||| |||||| Sbjct 71665 CTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 71713 >seq757 Length=325751 Score = 149 bits (164), Expect = 5e-31 Identities = 174/233 (75%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || |||||||| || ||| |||||| || |||||||| |||| Sbjct 30060 CCACCACGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 30001 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| |||| || |||||||| || |||||||||| |||||||| |||| || Sbjct 30000 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGG 29941 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | || ||||| ||| || || ||| || ||| | |||||||||| || |||| Sbjct 29940 ATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGT--CGATGGTGTCGGATGACTCCA 29883 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 |||| | || || ||||| |||||||||||||| |||||||| ||||||||| Sbjct 29882 CCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGATG 29830 >seq1759 Length=81252 Score = 125 bits (138), Expect = 5e-24 Identities = 139/183 (76%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| ||| ||| | || || |||||||| ||||| |||| Sbjct 66845 CCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 66904 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT- 44266 |||| |||||||| || | || | || ||||| ||| ||||| || | || ||| Sbjct 66905 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTT-GGCCTTAACGTTG 66963 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | |||||||||| || |||||||| | || || ||||| ||||| |||||||||||| Sbjct 66964 TCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACG 67023 Query 44327 AAG 44329 ||| Sbjct 67024 AAG 67026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359980230046206