Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1543 147 5e-30 seq1759 138 3e-27 seq757 129 1e-24 >seq1543 Length=161075 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||||||||| || ||| ||| Sbjct 71937 CAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGAC 71878 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || |||||||||||||| || || ||||| || |||||||| Sbjct 71877 ACCATCGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGTATCCCCCCAGACCAGCAG 71818 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| |||||||| || || | || || |||| || ||| || Sbjct 71817 CGCCTCATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAACATC 71758 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 71757 CAGAAGGAGTCTACTCTCCACCTCGT 71732 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||| || ||||| || ||| ||| Sbjct 72165 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGAC 72106 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || |||||||||||||| || || |||||||| |||||||| Sbjct 72105 ACCATCGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAG 72046 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || |||||||| || || | || || |||| || ||| || Sbjct 72045 CGCCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATC 71986 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 71985 CAGAAGGAGTCCACCCTTCACCTGGT 71960 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||| |||||||| || || || Sbjct 71709 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGAT 71650 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || |||||||||||||| || || ||||| || |||||||| Sbjct 71649 ACAATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAGCAG 71590 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || ||||| |||| || | || || ||| | Sbjct 71589 CGTCTCATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGGACACTCTCAGACTACAACATT 71530 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 71529 CAGAAGGAGTCGACGCTGCA-CTTG 71506 >seq1759 Length=81252 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 |||||||| || || || || || || ||||||||||||||||| || ||||||||| Sbjct 67025 TTCGTGAAGACCCTGACGGGCAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACCATC 66966 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || ||||| || ||||| |||||||| || || || || || |||||||| ||| | Sbjct 66965 GACAACGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATTG 66906 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || ||||| || ||||| | ||||| |||| || ||| |||| || Sbjct 66905 ATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCCGACTACAACATCCAGAA 66847 >seq757 Length=325751 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| |||||||| || ||| Sbjct 29837 CAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCATCCGAC 29896 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| || || |||||||| || || ||||| || |||||||| Sbjct 29897 ACCATCGACAATGTCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAG 29956 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || |||||||| || || | || || |||| || ||| | Sbjct 29957 CGCCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAACATT 30016 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 30017 CAGAAGGAGTCCACCCTGCACCTGGT 30042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203695449935692