Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Curvularia_20papendorfii_20[genbank_20GCA_5F000817285.1_202015-01- 12] 374 sequences; 33,379,470 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq154 109 1e-18 seq188 105 1e-17 >seq154 Length=40832 Score = 109 bits (120), Expect = 1e-18 Identities = 287/434 (66%), Gaps = 13/434 (3%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| || || ||||| ||||| || ||||||||||| ||| | ||||||||||| |||| Sbjct 13346 TTGTCGCGTTCGCTGCTGTTGAGGGTATCTTCTTTAGCGGTTCGTTCGCATCCATCTTCT 13405 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || | ||||| | || | ||||||| || |||| |||||| ||| |||| ||| | | Sbjct 13406 GGTTGAAGAAGCGTGGCCTAATGCCTGGCCTTACCTTCTCCAACGAGCTCATCTCTCGTG 13465 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATA--- 102092 | || || | || ||||| || ||| |||| || | || | | | Sbjct 13466 ATGAGGGCATGCACACTGACTTCGCCTGCCTGCTCTT------CTCTCTTCTCAACACCC 13519 Query 102093 -CCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 ||||| |||| || | | | || |||| || || || | ||||| ||||| Sbjct 13520 GCCCCAGCAAG-GAGGCCGTCCAAGCCATCATCACCGAGGCTGTTCAGATTGAGCAAGAG 13578 Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 || |||| | | ||||| | | | || |||||| |||| | ||| ||||| Sbjct 13579 TTCCTCAGCGACGCTCTGCCCTGTGCTCTGCTCGGCATGAACGCCAAGCTCATGTGCCAG 13638 Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGA-AAAGCACTATAA 102270 |||||||| ||||| || ||| || || | | | |||| | | | ||| || | Sbjct 13639 TACATTGAGTTTGTCGCTGATCGTCTGCTGCTCGCATTGGG-CAACACCAAGGTTTACCA 13697 Query 102271 TGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTT 102330 | ||||||||||| |||||||| || || || || | ||||||||||| || Sbjct 13698 CGCCACCAACCCCTTTGACTTCATGGAGAACATCTCGCTTGCTGGCAAGACCAACTTCTT 13757 Query 102331 TGAAAAGAGAGTCG 102344 || ||| | |||| Sbjct 13758 CGAGAAGCGTGTCG 13771 >seq188 Length=237477 Score = 105 bits (116), Expect = 1e-17 Identities = 172/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 || ||||| ||||||||||| | || | ||| ||||| || || || || |||||| Sbjct 167383 CCGCCAGCGGTCTTGGAGATCAAGGCACACGTCTTGAGAGTGTCGTAGATGCCGTCAATG 167324 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACAA 94911 ||||| |||| | | | | ||||||||| ||||| | || || | || || | Sbjct 167323 CTATCCTCTTTCATGTCGATAAGGAAGCAGGAGGACATCTGAGGGGATGGAGTACCGGCA 167264 Query 94912 TTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCA 94971 || ||||| || || || || || || || || | |||||| ||||| || ||| Sbjct 167263 TTGAACAGCGTCGGTGAGGCGTGTGTGAAGTATTTTTGTGACATGTAGTCATAGGTCTCA 167204 Query 94972 ATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGA 95031 ||| | | ||||| ||||| || |||||||| |||||||| | ||||| ||| Sbjct 167203 ATGGCCTTCTCAATGTCCTCGCCGTGGATACCGACAGCAACACGCATGAGCATGTGCTGT 167144 Query 95032 GGGCGCTC 95039 |||||||| Sbjct 167143 GGGCGCTC 167136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989579258037170