Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Curvularia_20papendorfii_20[genbank_20GCA_5F000817285.1_202015-01- 12] 374 sequences; 33,379,470 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq290 116 3e-21 seq273 96.9 3e-15 >seq290 Length=256071 Score = 116 bits (128), Expect = 3e-21 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || || || || |||| || | ||| || |||| Sbjct 202208 ACCGGCAAGACCATCACGCTCGAGGTCGAGTCCTCCGACACTATCGACAATGTCAAGACC 202267 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||||||||| || || || || || | || ||||||||||| Sbjct 202268 AAGATTCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGCTTGATCTTTGCCGGCAAG 202327 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | || || |||||| | ||||| |||||||||||||| ||||||||| Sbjct 202328 CAGCTTGAAGACGGTCGCACCCTGTCCGACTACAACATTCAAAAGGAATCCACC 202381 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || |||| | || |||||| | | | Sbjct 202923 ATGCAAATCTTCGTGAAGACCCTTACCGGCAAGACAATCACATTGGAGGTGGAATCGAGC 202982 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | || || || || |||||||||||||| || || || || Sbjct 202983 GATACCATTGACAACGTGAAGACCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAG 203042 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| || || || | |||||| | | || |||| || |||||| Sbjct 203043 CAGCGTCTCATCTTTGCTGGTAAGCAACTCGAGGATGGCAGGACGCTCTCGGACTACAAC 203102 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || || |||||| | || || || Sbjct 203103 ATCCAGAAGGAGTCCACCCTCCACTTGGT 203131 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || || || | |||| || | ||| | |||| | Sbjct 202491 ACCGGCAAGACCATCACACTCGAGGTTGAGTCATCCGACACGATCGACAACGTCAAGACA 202550 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || || || || || || || || |||||||| Sbjct 202551 AAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCCTGATTTTCGCCGGCAAG 202610 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| |||||| | ||||| ||||||||||| || || || || Sbjct 202611 CAGCTCGAGGATGGCCGCACTCTGTCCGACTACAACATTCAGAAGGAGTCTAC 202663 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||||||||| || || | | Sbjct 202695 ATGCAGATCTTCGTCAAGACATTGACTGGAAAGACCATCACTCTTGAGGTCGAGTCTTCG 202754 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | |||| || || |||||||||||||| || || || || || Sbjct 202755 GATACTATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 202814 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||||| || || ||| || |||| || |||||| Sbjct 202815 CAGCGTCTCATTTTCGCTGGTAAGCAGTTGGAAGACGGCCGTACTCTCTCGGACTACAAC 202874 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || || || | || |||| || ||| Sbjct 202875 ATCCAGAAGGAGTCAACTCTTCACTTGGTGCTCCGTCTGCGTGGTGGT 202922 >seq273 Length=368666 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370 |||||||||||| ||||| || || || || ||||| || || |||||||| ||| | || Sbjct 357241 AGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTTGA 357182 Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTT 22430 |||| |||||| ||||||| |||||||| || || || || ||| | || || || | Sbjct 357181 GGATGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTCCACTTGGTCCT 357122 Query 22431 GCGATTGCGCGGAGGT 22446 || |||| || ||| Sbjct 357121 CCGCCTGCGTGGTGGT 357106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726086827310