Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Curvularia_20papendorfii_20[genbank_20GCA_5F000817285.1_202015-01- 12] 374 sequences; 33,379,470 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq290 161 2e-34 seq214 109 1e-18 seq154 105 1e-17 >seq290 Length=256071 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| || |||||||| || || ||| Sbjct 202921 CCACCACGCAGACGGAGCACCAAGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCCGAG 202862 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| |||||||| || ||||| ||||| | || ||||| || || Sbjct 202861 AGAGTACGGCCGTCTTCCAACTGCTTACCAGCGAAAATGAGACGCTGCTGGTCTGGGGGG 202802 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| ||||| ||||||||| || || || || | || || || Sbjct 202801 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATAGTATCCGAAGACTCGACC 202742 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| ||||| || | ||||||||||| |||||||| Sbjct 202741 TCAAGAGTGATGGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 202695 >seq214 Length=233559 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225436 GCACACTGCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAG 225495 ||| ||| | || ||||| ||||||||||| || ||||| | | | || | | | Sbjct 86215 GCAGACTTCATCGAGGAAACCAGAGTCGTGTGAGACAATCAAGCTGGTGACCTCACTGTG 86156 Query 225496 GCCCTTGAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTC 225555 |||||||| | | ||||||||| |||||| ||| |||| |||||| || ||||| Sbjct 86155 AGACTTGAGGTACTTTGCGAGCCATGCAACGTTGGCGACATCCAAGTGGTTAGTGGGTTC 86096 Query 225556 GTCCAGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTT 225615 ||| ||||| || | ||| || || || |||||||| | | || ||||||||| || Sbjct 86095 GTCGAGAAGAAGCACGTCGGCTCGCATAAGCATGGCGCGAGCCAAAGCCAGCTTCATCTT 86036 Query 225616 CCAGCCCCCGGACAGGGAGCCGA 225638 ||| || || ||||| || |||| Sbjct 86035 CCAACCTCCAGACAGAGAACCGA 86013 >seq154 Length=40832 Score = 105 bits (116), Expect = 1e-17 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || || || |||||||||||||| |||||| | Sbjct 13797 CATGACACCAGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCAGC 13738 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGC--GCCAAACTGCTTGGGGTAA 10052 || || ||| ||||||||||||||||||||| ||| | |||| ||||| || Sbjct 13737 AAGCGAGATGTTCTCCATGAAGTCAAAGGGGTTGGTGGCGTGGTAAAC--CTTGGTGTTG 13680 Query 10053 CCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAG 10112 || | ||| | | || ||||| || ||||| |||||||||| ||| || | | | Sbjct 13679 CCCAATGCGAGCAGCAGACGATCAGCGACAAACTCAATGTACTGGCACATGAGCTTGGCG 13620 Query 10113 TTCATGCCAATCATGCGGCAGGGGATGGCGTCGC 10146 |||||||| | || ||||| | ||||||| Sbjct 13619 TTCATGCCGAGCAGAGCACAGGGCAGAGCGTCGC 13586 Score = 93.3 bits (102), Expect = 8e-14 Identities = 123/169 (73%), Gaps = 9/169 (5%) Strand=Plus/Minus Query 10622 CAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAA 10681 ||||||||| | || ||||||||| | | ||||||||| |||||| ||| |||||| Sbjct 13058 CAGGTTCTCGTTGACGATGCCATCGGAGGCGGCAAAGAAGGCGAGGACGTGGGAGATGAA 12999 Query 10682 GTGGCGCTCATCATCGTTCAG----TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCT 10737 |||||| || |||||||| || ||| ||||| | ||||| | ||| | Sbjct 12998 AAAGCGCTCGTCGTCGTTCAGGCGCTTGTTC----CAGTCGTGAAGATCCTTGGAGAGAT 12943 Query 10738 GGACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTG 10786 | |||||| |||||||||||| | | |||||||||||||||| || Sbjct 12942 CAATCTCCTCGGCGGTCCAGAAAGAGCCT-CGGCCTTCTTGTACATTTG 12895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921618091415280