Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Curvularia_20papendorfii_20[genbank_20GCA_5F000817285.1_202015-01- 12] 374 sequences; 33,379,470 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq290 120 7e-22 seq154 93.3 1e-13 >seq290 Length=256071 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | |||||| | || || || | ||| || || || ||| Sbjct 203113 TCCTTCTGGATGTTGTAGTCCGAGAGCGTCCTGCCATCCTCGAGTTGCTTACCAGCAAAG 203054 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || ||||| || || || |||||||| || | |||||||| Sbjct 203053 ATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGTCTTCACGTTG 202994 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||||||||||| || || | ||||| ||||| ||||| || ||||| ||| Sbjct 202993 TCAATGGTATCGCTCGATTCCACCTCCAATGTGATTGTCTTGCCGGTAAGGGTCTTCACG 202934 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 202933 AAGATTTGCAT 202923 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||| || || |||||||| || || || || ||||| Sbjct 202885 TCCTTCTGGATGTTGTAGTCCGAGAGAGTACGGCCGTCTTCCAACTGCTTACCAGCGAAA 202826 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| || |||||| || || || || || ||||| || || || ||| Sbjct 202825 ATGAGACGCTGCTGG---TCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACG 202769 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || |||| ||| || || || || || ||||| ||||| || |||| |||||| Sbjct 202768 TTGTCAATAGTATCCGAAGACTCGACCTCAAGAGTGATGGTCTTTCCAGTCAATGTCTTG 202709 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 202708 ACGAAGATCTGCAT 202695 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | ||| ||| ||||| || || ||||||| Sbjct 202410 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGATTCCTTTTGAATGTTGTAGTCGGAC 202351 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| | || || || || ||||||| ||||| || |||||| Sbjct 202350 AGGGTGCGACCGTCTTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGG---TCTGGG 202294 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || ||||| || || | || || || || |||| ||| || || Sbjct 202293 GGAATACCCTCCTTGTCCTGAATCTTGGTCTTGACATTGTCGATAGTGTCGGAGGACTCG 202234 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGT 288449 || ||||||||||| ||||| ||||| Sbjct 202233 ACCTCGAGCGTGATGGTCTTGCCGGT 202208 >seq154 Length=40832 Score = 93.3 bits (102), Expect = 1e-13 Identities = 157/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 269117 AAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGA 269176 |||||||| | | |||||| | || ||| || || |||| ||||| ||| | |||||| Sbjct 13574 AAGAGTTCCTCAGCGACGCTCTGCCCTGTGCTCTGCTCGGCATGAACGCCAAGCTCATGT 13633 Query 269177 ATCAATATATCGAATTCGTGGCTGATCGTAT-CTTCACGGCACTCGGTTATGAGAAAGTG 269235 || || || || || || ||||||||| | || | || || | || | || || Sbjct 13634 GCCAGTACATTGAGTTTGTCGCTGATCGTCTGCTGCTCG-CATTGGGCAACACCAAGGTT 13692 Query 269236 TACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAAC 269295 ||| | | | || ||||| | ||| ||||| || ||||| | || ||||| ||| Sbjct 13693 TACCACGCCACCAACCCCTTTGACTTCATGGAGAACATCTCGCTTGCTGGCAAGACCAAC 13752 Query 269296 TTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG 269340 |||||||| ||||||||| | ||||| || ||||||| ||| Sbjct 13753 TTCTTCGAGAAGCGTGTCGGTGACTACCAGAAGGCTGGTGTCATG 13797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179648747243572