Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Curvularia_20papendorfii_20[genbank_20GCA_5F000817285.1_202015-01- 12] 374 sequences; 33,379,470 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq290 120 3e-22 >seq290 Length=256071 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41980 GACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAG 42039 |||| || | | ||| | |||||| || | ||| |||||| || || ||||| || | Sbjct 203151 GACCGCCACGAAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCG 203092 Query 42040 CCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTG 42099 || |||| | || || || ||||||||||| || ||||| ||||||||||| | | Sbjct 203091 AGAGCGTCCTGCCATCCTCGAGTTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGAG 203032 Query 42100 GCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 42158 | | | |||||||||| || | || || | ||| | | | || |||||||||||| Sbjct 203031 GGATACCCTCCTTGTCC-TGGATCTTGGTCTTCACGTTGTCAATGGTATCGCTCGATTCC 202973 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| || ||||| || || ||||| || ||||||||||| Sbjct 202972 ACCTCCAATGTGATTGTCTTGCCGGTAAGGGTCTTCACGAAGATTTGCAT 202923 Score = 104 bits (114), Expect = 3e-17 Identities = 126/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| || | |||||| || | || || |||||||| || ||||| Sbjct 202658 CTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 202599 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || |||||||||| ||| ||| |||| ||| Sbjct 202598 AATCAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTTGTCTTGA-CGT 202540 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 | | | ||||||| || || || |||| |||||||| ||||| || Sbjct 202539 TGTCGATCGTGTCGGATGACTCAACCTCGAGTGTGATGGTCTTGCCGGT 202491 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | || |||||| || || ||||| || | ||||| || | Sbjct 202910 ACGGAGCACCAAGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGGCC 202851 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || | ||||||||||||||| ||||| ||||||||||| | || | || |||||| Sbjct 202850 GTCTTCCAACTGCTTACCAGCGAAAATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTT 202791 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| ||| || |||| ||| | | | || || || || || || | |||| Sbjct 202790 GTCTTGGATCTTGGCCTTGA-CGTTGTCAATAGTATCCGAAGACTCGACCTCAAGAGTGA 202732 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || || | ||||| || ||||| ||||| Sbjct 202731 TGGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 202695 Score = 89.7 bits (98), Expect = 6e-13 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||| ||||| || | ||| || || |||| || |||||||| || || || Sbjct 202374 TCCTTTTGAATGTTGTAGTCGGACAGGGTGCGACCGTCTTCAAGCTGCTTGCCGGCAAAG 202315 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 42136 || | ||||||||||| | || | | |||||||||| ||| | || || |||| | Sbjct 202314 ATCAAGCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCC-TGAATCTTGGTCTTGACATT 202256 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 | | |||||| || || || |||| ||||||||| ||||| || Sbjct 202255 GTCGATAGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCGGT 202208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543210260480160