Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Curvularia_20papendorfii_20[genbank_20GCA_5F000817285.1_202015-01- 12] 374 sequences; 33,379,470 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq290 105 7e-18 seq273 87.8 2e-12 >seq290 Length=256071 Score = 105 bits (116), Expect = 7e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| |||||||||||||| || | | |||||| |||||||||||||||||||| Sbjct 202380 GTGGATTCCTTTTGAATGTTGTAGTCGGACAGGGTGCGACCGTCTTCAAGCTGCTTGCCG 202321 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | ||||||||||| || ||||| || || || || || || || ||| Sbjct 202320 GCAAAGATCAAGCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGAATCTTGGTCTTG 202261 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| || | || || || || || || | || | |||||||||||| Sbjct 202260 ACATTGTCGATAGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCGGT 202208 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| | |||| || || || || || |||||||| || | Sbjct 202922 ACCACCACGCAGACGGAGCACCAAGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCCGA 202863 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || || ||||||| | |||||| || || ||||||| ||||||||||| || || Sbjct 202862 GAGAGTACGGCCGTCTTCCAACTGCTTACCAGCGAAAATGAGACGCTGCTGGTCTGGGGG 202803 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| || || ||| || || | ||||| | || || Sbjct 202802 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATAGTATCCGAAGACTCGAC 202743 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | |||||| || ||||| || || ||||| || ||||| Sbjct 202742 CTCAAGAGTGATGGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 202695 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || ||||||||||| || | | ||||| | || Sbjct 202678 AGGACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGCCATCC 202619 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| |||| || ||||||||||| |||||||| || || || || Sbjct 202618 TCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCC 202559 Query 64352 TGTATTTTTTGCTTTAC 64368 || || ||| ||| || Sbjct 202558 TGGATCTTTGTCTTGAC 202542 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | ||||| | || | || || || || || |||||||| || | Sbjct 203150 ACCGCCACGAAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 203091 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || | | || || || ||||| || ||| | ||||| ||||||||||| ||||| Sbjct 203090 GAGCGTCCTGCCATCCTCGAGTTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGAGG 203031 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| || || | ||||| | | ||||| Sbjct 203030 GATACCCTCCTTGTCCTGGATCTTGGTCTTCACGTTGTCAATGGTATCGCTCGATTCCAC 202971 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||||| | || || ||||| |||||||| Sbjct 202970 CTCCAATGTGATTGTCTTGCCGGTAAGGGTCTTCACGAAGATTTGCAT 202923 >seq273 Length=368666 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | || ||||| | || ||||||||||||||| Sbjct 357137 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCG 357196 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || | ||||| ||||||||||| || ||||| || || || ||| || Sbjct 357197 GCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTGGT 357244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499642464160560