Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Curvularia_20papendorfii_20[genbank_20GCA_5F000817285.1_202015-01- 12] 374 sequences; 33,379,470 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq154 107 2e-18 seq290 100 3e-16 seq143 86.0 6e-12 >seq154 Length=40832 Score = 107 bits (118), Expect = 2e-18 Identities = 246/367 (67%), Gaps = 25/367 (7%) Strand=Plus/Plus Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282 ||||| ||||| || || ||||||||| ||||| | || || ||| ||||||| || Sbjct 13426 ATGCCTGGCCTTACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGCATGCACACTGAC 13485 Query 47283 TTTGCCTG----------TCTCTACTACAACACTAGAGTCGATCAAAAGTTGGACGTGCC 47332 || ||||| ||||| || |||||| | | | ||| ||| | Sbjct 13486 TTCGCCTGCCTGCTCTTCTCTCTTCT-CAACACCCGCCCC-AGCAA-----GGAGG---- 13534 Query 47333 CACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGC 47392 ||||| | ||| | |||| || || |||||| ||||| || ||| || Sbjct 13535 --CCGTCCAAGCCATCATCACCGAGGCTGTTCAGATTGAGCAAGAGTTCCTCAGCGACGC 13592 Query 47393 TCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGT 47452 ||||||| || | | || |||||||| || | ||| | ||||||| || ||||| Sbjct 13593 TCTGCCCTGTGCTCTGCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATTGAGTTTGT 13652 Query 47453 CGCCGACCGCCTGCTCGTTCAGCTAAAGTATC-CCAAGATTTACCACACCGAGAATCCAT 47511 ||| || || ||||| | || | | | | ||||| |||||||| || || || | Sbjct 13653 CGCTGATCGTCTGCT-GCTCGCATTGGGCAACACCAAGGTTTACCACGCCACCAACCCCT 13711 Query 47512 TCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCG 47571 | || || ||| | ||||| ||||| | |||||||||||||| ||||||||||| |||| Sbjct 13712 TTGACTTCATGGAGAACATCTCGCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTCG 13771 Query 47572 GCGAATA 47578 | || || Sbjct 13772 GTGACTA 13778 >seq290 Length=256071 Score = 100 bits (110), Expect = 3e-16 Identities = 128/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || ||||| ||||| ||| || ||||| ||| || ||||| || || Sbjct 202663 GTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCG 202604 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| |||||||| || ||||| ||||||||||||||| ||| || |||| Sbjct 202603 GCGAAAATCAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTTGTCTTG 202544 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 | |||| |||| ||||| | ||| || |||| || | || |||||||| Sbjct 202543 ACGTTG-TCGATCGTGTCGGATGACTCAACCTCGAGTGTGATGGTCTTGCCGGT 202491 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || |||||||| ||||| ||| || |||||| || || ||||| || || Sbjct 202380 GTGGATTCCTTTTGAATGTTGTAGTCGGACAGGGTGCGACCGTCTTCAAGCTGCTTGCCG 202321 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| |||||||| || || || || |||||||||||| || || |||| Sbjct 202320 GCAAAGATCAAGCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGAATCTTGGTCTTG 202261 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 | | |||| ||||| | |||||| |||| || | || |||||||| Sbjct 202260 ACATTGTCGATAGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCGGT 202208 >seq143 Length=90640 Score = 86.0 bits (94), Expect = 6e-12 Identities = 96/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | |||||| ||| || ||||| |||||| Sbjct 43100 GTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCCTCGAGCTGCTTTCCA 43041 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| || || || ||||||||||||||| ||| || |||| Sbjct 43040 GCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 42981 Query 127037 A-GTTGT 127042 | ||||| Sbjct 42980 ACGTTGT 42974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498577033760