Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Curvularia_20papendorfii_20[genbank_20GCA_5F000817285.1_202015-01- 12] 374 sequences; 33,379,470 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq290 141 2e-28 seq273 114 3e-20 seq143 114 3e-20 >seq290 Length=256071 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | |||||| || |||||||| |||| ||||||||| | | ||| Sbjct 203143 CGAAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTC 203084 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || ||||| || || ||||| || || |||||||||||||||||||||||| || || Sbjct 203083 CTGCCATCCTCGAGTTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATACCC 203024 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| || | ||| || | | ||| || ||||| Sbjct 203023 TCCTTGTCCTGGATCTTGGTCTTCACGTTGTCAATGGTATCGCTCGATTCCACCTCCAAT 202964 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || ||||| || ||||| Sbjct 202963 GTGATTGTCTTGCCGGTAAGGGTCTTCACGAAGATTTG 202926 Score = 122 bits (134), Expect = 2e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || ||||| |||||||| || | ||||||||| | || ||| | ||||| Sbjct 202678 AGGACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGCCATCC 202619 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||| || || ||||||||||| ||| ||| || || ||| Sbjct 202618 TCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCC 202559 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| ||| |||| ||||| | || || || || | ||||| ||| Sbjct 202558 TGGATCTTTGTCTTGACGTTGTCGATCGTGTCGGATGACTCAACCTCGAGTGTGATGGTC 202499 Query 199598 TTACCCGTGA 199607 || || |||| Sbjct 202498 TTGCCGGTGA 202489 Score = 109 bits (120), Expect = 1e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| || || |||||||| | ||||||||| | || || | || ||| Sbjct 202395 AGGACCAGGTGGAGGGTGGATTCCTTTTGAATGTTGTAGTCGGACAGGGTGCGACCGTCT 202336 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||| ||||| | ||||||||||| || ||| || || ||| Sbjct 202335 TCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCC 202276 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| ||||| | | || || || | |||||| ||| Sbjct 202275 TGAATCTTGGTCTTGACATTGTCGATAGTGTCGGAGGACTCGACCTCGAGCGTGATGGTC 202216 Query 199598 TTACCCGTGA 199607 || || |||| Sbjct 202215 TTGCCGGTGA 202206 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| |||||||| |||| ||||||||| | | ||| | || ||| Sbjct 202906 AGCACCAAGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGGCCGTCT 202847 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 |||| |||||| || ||||| ||||||||||||||||| || Sbjct 202846 TCCAACTGCTTACCAGCGAAAATGAGACGCTGCTGGTCTGG 202806 >seq273 Length=368666 Score = 114 bits (126), Expect = 3e-20 Identities = 86/101 (85%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| ||||||||||| |||| ||||||||| | | ||| | ||||| Sbjct 357122 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCC 357181 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| ||||||||||||||||||||||||||||| Sbjct 357182 TCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGG 357222 >seq143 Length=90640 Score = 114 bits (126), Expect = 3e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || ||||||||||| |||| ||||||||| | | || | ||||| Sbjct 43115 AGGACGAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCC 43056 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| |||||||||||||||||||||||||| ||| || || ||| Sbjct 43055 TCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 42996 Query 199538 TGAATCTT 199545 || ||||| Sbjct 42995 TGGATCTT 42988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178915950755058