Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Curvularia_20papendorfii_20[genbank_20GCA_5F000817285.1_202015-01- 12] 374 sequences; 33,379,470 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq290 143 3e-29 seq273 98.7 1e-15 seq143 96.9 4e-15 >seq290 Length=256071 Score = 143 bits (158), Expect = 3e-29 Identities = 145/186 (78%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||||| ||| |||||| || || ||||||||||| |||||||| | || ||| Sbjct 202675 ACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGCCATCCTCG 202616 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||||||||| |||| |||||||||||| | || | || |||||||||| | Sbjct 202615 AGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGG 202556 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| |||||| ||| | | | ||||||| || || || || | |||||||| || Sbjct 202555 ATCTTTGTCTTGA-CGTTGTCGATCGTGTCGGATGACTCAACCTCGAGTGTGATGGTCTT 202497 Query 46564 GCCCGT 46569 ||| || Sbjct 202496 GCCGGT 202491 Score = 122 bits (134), Expect = 1e-22 Identities = 127/167 (76%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||| || ||||||||||| || ||||| |||| || |||||||||||||| || Sbjct 202374 TCCTTTTGAATGTTGTAGTCGGACAGGGTGCGACCGTCTTCAAGCTGCTTGCCGGCAAAG 202315 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||||||||||||||| | || | | |||||||||| ||||| |||||| | Sbjct 202314 ATCAAGCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGAATCTTGGTCTTGACATTG 202255 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | |||||| || || || || | ||||||||| ||||| || Sbjct 202254 TCGATAGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCGGT 202208 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || || | | || ||||| ||||| || || || Sbjct 203114 CTCCTTCTGGATGTTGTAGTCCGAGAGCGTCCTGCCATCCTCGAGTTGCTTACCAGCAAA 203055 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | |||||||||| |||||| |||| | ||| Sbjct 203054 GATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGTCTTCA-CGT 202996 Query 46522 CGCCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | || | | |||||||||||||| |||| ||||| || ||||| || || || || | Sbjct 202995 TGTCAATGGTATCGCTCGATTCCACCTCCAATGTGATTGTCTTGCCGGTAAGGGTCTTCA 202936 Query 46581 CAAAGATTTGCAT 46593 | ||||||||||| Sbjct 202935 CGAAGATTTGCAT 202923 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || ||||| || |||| || | |||||| || ||||| Sbjct 202886 CTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGGCCGTCTTCCAACTGCTTACCAGCGAA 202827 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || ||||||||| |||||| ||||| ||| Sbjct 202826 AATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGA-CGT 202768 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | || || || || || || | |||||||| || || |||| || || | Sbjct 202767 TGTCAATAGTATCCGAAGACTCGACCTCAAGAGTGATGGTCTTTCCAGTCAATGTCTTGA 202708 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 202707 CGAAGATCTGCAT 202695 >seq273 Length=368666 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| |||||||| | || || ||||||||||||||||| Sbjct 357142 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 357201 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || | ||||||||||| | || | || ||||||||| Sbjct 357202 GATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 357240 >seq143 Length=90640 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| | || ||||||||||| || ||||| Sbjct 43095 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAA 43036 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 || | ||||||||||| | || | || |||||||||| |||||| ||||| Sbjct 43035 GATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA 42980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565235757510480