Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Curvularia_20papendorfii_20[genbank_20GCA_5F000817285.1_202015-01- 12] 374 sequences; 33,379,470 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq290 122 3e-22 seq132 100 9e-16 seq143 93.3 1e-13 >seq290 Length=256071 Score = 122 bits (134), Expect = 3e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || ||||| ||||||||||| || ||||| || || || Sbjct 202697 CATACCACCACGGAGGCGGAGGACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTC 202638 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || || || || || || || || ||||| || || Sbjct 202637 GGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCTGG 202578 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || | || || || || |||| || |||| || Sbjct 202577 AGGAATGCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCGATCGTGTCGGATGACTC 202518 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||| || ||||| | ||||| ||||| Sbjct 202517 AACCTCGAGTGTGATGGTCTTGCCGGT 202491 Score = 118 bits (130), Expect = 3e-21 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | |||||||| ||||| || || || || | Sbjct 202929 TTTGCATACCACCACGCAGACGGAGCACCAAGTGAAGAGTTGACTCCTTCTGGATGTTGT 202870 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || ||||| | || || ||||| || || ||||| ||||| | Sbjct 202869 AGTCCGAGAGAGTACGGCCGTCTTCCAACTGCTTACCAGCGAAAATGAGACGCTGCTGGT 202810 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || || || || || || || || || ||||| | ||| || | Sbjct 202809 CTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATAGTATCCGAAG 202750 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || ||||| || | |||||||| || | ||| || || || |||||||| Sbjct 202749 ACTCGACCTCAAGAGTGATGGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 202695 Score = 107 bits (118), Expect = 6e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||| ||||| | | || || | || || || ||||| || || || || || Sbjct 203156 TTACTGACCGCCACGAAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTA 203097 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 || || | || | ||||| || ||||| || ||||||||||| ||||| ||||| || Sbjct 203096 GTCCGAGAGCGTCCTGCCATCCTCGAGTTGCTTACCAGCAAAGATGAGACGCTGCTGGTC 203037 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 ||||| || || || || ||||| || || | || || || ||||| | ||| | Sbjct 203036 CGGAGGGATACCCTCCTTGTCCTGGATCTTGGTCTTCACGTTGTCAATGGTATCGCTCGA 202977 Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || | ||| | |||||| ||||| || || || || || || ||||| Sbjct 202976 TTCCACCTCCAATGTGATTGTCTTGCCGGTAAGGGTCTTCACGAAGATTTGCAT 202923 Score = 104 bits (114), Expect = 7e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || || || |||||||| || || || Sbjct 202414 CATACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGATTCCTTTTGAATGTTGTAGTC 202355 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || |||||||| || || || |||||||| | || ||||| || || Sbjct 202354 GGACAGGGTGCGACCGTCTTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCTGG 202295 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || |||||||| || | || ||||| || || | || || | || Sbjct 202294 GGGAATACCCTCCTTGTCCTGAATCTTGGTCTTGACATTGTCGATAGTGTCGGAGGACTC 202235 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 || || || || | ||||| ||||| Sbjct 202234 GACCTCGAGCGTGATGGTCTTGCCGGT 202208 >seq132 Length=48160 Score = 100 bits (110), Expect = 9e-16 Identities = 106/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 |||||||||||| | || || ||| || || | ||||||||||| ||||| || || Sbjct 37631 CGTGGCACACCAAGGGTGACGTTC---TTGGAAGACACACCAGCAAAATGGAAGGTGTTG 37575 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| |||||||||||| ||||| ||||||| || || ||||| || Sbjct 37574 AGCGTCATCTGCGTAGCGGGCTCACCAATGGACTGGGCTGCAAGCACACCGACCATCTCA 37515 Query 377578 CCAGGATTGACAATAGCCT 377596 |||||| |||| ||||| Sbjct 37514 CCAGGAGCGACAGCAGCCT 37496 >seq143 Length=90640 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || || || ||||| || ||||| || || || || || || Sbjct 43133 ATACCACCACGGAGACGGAGGACGAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCG 43074 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || ||||| || || || |||||||| ||||| ||||| ||||| || || Sbjct 43073 GAAAGGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGG 43014 Query 140628 GGAATTCCTTCTTTATCCTGAATTTT 140653 ||||| || || || ||||| || || Sbjct 43013 GGAATGCCCTCCTTGTCCTGGATCTT 42988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515247139090322