Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Curvularia_20papendorfii_20[genbank_20GCA_5F000817285.1_202015-01- 12] 374 sequences; 33,379,470 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq300 104 6e-17 seq290 104 6e-17 seq220 104 6e-17 seq143 100 7e-16 >seq300 Length=14979 Score = 104 bits (114), Expect = 6e-17 Identities = 177/251 (71%), Gaps = 7/251 (3%) Strand=Plus/Minus Query 7465 TTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAAGGTTAGAATTAGCTGCTCCG 7524 ||| | ||| | || || ||| |||||| | | || || |||||| | | | || Sbjct 12271 TTTGCAGGTCTAATTGGAACTGCTTTTTCTGTATTAATTAGATTAGAACTGTCAGGACCA 12212 Query 7525 GGTTCTCAAATATTGAG-TGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGC 7583 ||| |||| ||| || || |||| ||| | || ||| ||||||||| || ||||| Sbjct 12211 GGTGTTCAA-TATATAGCTGATAAT---CAATTATATAACAGTATTATTACTGCTCATGC 12156 Query 7584 CTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATT 7643 || |||||||||||||| | |||||||| | | | || || || ||||| || | || Sbjct 12155 TATTATTATGATTTTCTTTATGGTTATGCCAGCTTTAATTGGTGGATTCGGTAACTTTTT 12096 Query 7644 CGTTCCTTTAATGATT-GGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTT 7702 |||| || | |||| || | |||||||||| || || || ||||| |||||||||| Sbjct 12095 ACTTCCATT-AGGATTAGGAGGACCTGATATGGGATTCCCTAGACTTAATAATATAAGTT 12037 Query 7703 TTTGATTACTA 7713 | |||| || Sbjct 12036 ACTTATTATTA 12026 >seq290 Length=256071 Score = 104 bits (114), Expect = 6e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| || || || |||| ||||| || | | ||| | || ||| Sbjct 202906 AGCACCAAGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGGCCGTCT 202847 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| |||||||| || || || || ||||| || || || || ||||||||| Sbjct 202846 TCCAACTGCTTACCAGCGAAAATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 202787 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || || || || || || | || || || | ||||| ||| Sbjct 202786 TGGATCTTGGCCTTGACGTTGTCAATAGTATCCGAAGACTCGACCTCAAGAGTGATGGTC 202727 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 202726 TTTCCAGTCAATGTCTTGACGAAGATCTGCAT 202695 >seq220 Length=10208 Score = 104 bits (114), Expect = 6e-17 Identities = 177/251 (71%), Gaps = 7/251 (3%) Strand=Plus/Minus Query 7465 TTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAAGGTTAGAATTAGCTGCTCCG 7524 ||| | ||| | || || ||| |||||| | | || || |||||| | | | || Sbjct 6117 TTTGCAGGTCTAATTGGAACTGCTTTTTCTGTATTAATTAGATTAGAACTGTCAGGACCA 6058 Query 7525 GGTTCTCAAATATTGAG-TGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGC 7583 ||| |||| ||| || || |||| ||| | || ||| ||||||||| || ||||| Sbjct 6057 GGTGTTCAA-TATATAGCTGATAAT---CAATTATATAACAGTATTATTACTGCTCATGC 6002 Query 7584 CTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATT 7643 || |||||||||||||| | |||||||| | | | || || || ||||| || | || Sbjct 6001 TATTATTATGATTTTCTTTATGGTTATGCCAGCTTTAATTGGTGGATTCGGTAACTTTTT 5942 Query 7644 CGTTCCTTTAATGATT-GGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTT 7702 |||| || | |||| || | |||||||||| || || || ||||| |||||||||| Sbjct 5941 ACTTCCATT-AGGATTAGGAGGACCTGATATGGGATTCCCTAGACTTAATAATATAAGTT 5883 Query 7703 TTTGATTACTA 7713 | |||| || Sbjct 5882 ACTTATTATTA 5872 >seq143 Length=90640 Score = 100 bits (110), Expect = 7e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || || || |||| ||||| |||| | || | ||||| Sbjct 43115 AGGACGAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCC 43056 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || ||||| || ||||| || |||||||| Sbjct 43055 TCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 42996 Query 225622 TGGATCTT 225629 |||||||| Sbjct 42995 TGGATCTT 42988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192525485539556