Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Curvularia_20papendorfii_20[genbank_20GCA_5F000817285.1_202015-01- 12] 374 sequences; 33,379,470 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq290 131 2e-25 seq143 114 1e-20 seq273 111 1e-19 >seq290 Length=256071 Score = 131 bits (144), Expect = 2e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || |||||||| || ||||||||||||||| |||||||| Sbjct 202693 CCACCACGGAGGCGGAGGACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAC 202634 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||||||||| ||||||||||| ||||| | ||| Sbjct 202633 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCTGGAGGA 202574 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| ||| ||| ||| | | | |||||| ||||| || Sbjct 202573 ATGCCCTCCTTGTCCTGGATCTTTGTCTT-GACGTTGTCGATCGTGTCGGATGACTCAAC 202515 Query 41815 CTCCACCGTTATCGTTTTACCCGT 41838 ||| | || || || || || || Sbjct 202514 CTCGAGTGTGATGGTCTTGCCGGT 202491 Score = 120 bits (132), Expect = 3e-22 Identities = 153/206 (74%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || ||| ||||| |||||||| |||||||| Sbjct 202410 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGATTCCTTTTGAATGTTGTAGTCGGAC 202351 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || |||||||||||||| || |||| |||||| ||||| | |||| Sbjct 202350 AGGGTGCGACCGTCTTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCTGGGGGA 202291 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | | |||||||||| ||| | || | ||| || | || | ||||||| ||||| Sbjct 202290 ATACCCTCCTTGTCC-TGAATCTTGGTCTTGACATTGTCG--ATAGTGTCGGAGGACTCG 202234 Query 41813 ACCTCCACCGTTATCGTTTTACCCGT 41838 ||||| | ||| || || || || || Sbjct 202233 ACCTCGAGCGTGATGGTCTTGCCGGT 202208 >seq143 Length=90640 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||||||||| ||||| |||||||| Sbjct 43130 CCACCACGGAGACGGAGGACGAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAA 43071 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||||||||| || ||||| || || ||||| ||||||| |||| Sbjct 43070 AGGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGA 43011 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | || |||||||||| ||| || Sbjct 43010 ATGCCCTCCTTGTCCTGGATCTT 42988 >seq273 Length=368666 Score = 111 bits (122), Expect = 1e-19 Identities = 84/99 (85%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| ||||||||||| ||||| | || || ||||||||||||||||| Sbjct 357142 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 357201 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 || || ||||| ||||||| ||||| || ||||||||| Sbjct 357202 GATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 357240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301838728800