Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Curvularia_20sp._20IFB-Z10_20[genbank_20GCA_5F002161795.1_202017-05- 30] 136 sequences; 33,010,211 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq87 140 2e-28 seq64 140 2e-28 seq93 107 1e-18 seq2 98.7 7e-16 >seq87 Length=8822 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 5673 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 5732 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 5733 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 5767 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 7680 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 7739 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||||||| Sbjct 7740 CCCAATATTTAGCCTTA 7756 >seq64 Length=50038 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1892 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1951 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1952 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1986 >seq93 Length=1979483 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | |||||| |||||||| |||||| || || |||||||||| Sbjct 928049 TACCACCACGCAGACGGAGCACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAG 928108 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | ||| |||| || | ||| |||||||| || || ||||| || || || | || Sbjct 928109 AGAGAGTACGGCCGTCTTCCAGTTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCTGGGG 928168 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || || || ||| || ||| || || | | |||||| | || | Sbjct 928169 GAATACCCTCCTTATCTTGAATCTTGGACTTGACGTTGTCAATAGTATCCGAAGACTCCA 928228 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | |||| || || || || || ||||| || || ||||| |||||||| Sbjct 928229 CCTCTAGAGTGATGGTCTTTCCAGTCAACGTCTTGACGAAGATCTGCAT 928277 >seq2 Length=1714173 Score = 98.7 bits (108), Expect = 7e-16 Identities = 206/305 (68%), Gaps = 8/305 (3%) Strand=Plus/Plus Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTA 6246 |||| | ||| | |||||||||||||| ||| ||| ||| ||||| | ||||| | Sbjct 185837 ATGTCACCGACCCCTTCTACCGCTACAAGATGGAGCGTATCCAGTCCAAGATTGAGGGCA 185896 Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGAC 6306 |||| ||||| || || || |||||||||||| || | ||||| ||| ||| | Sbjct 185897 AGGGCAACGGCATCAAGACTGTCATTGTCAACCTGACCAGTGTCGC--CGGCTCTC--TC 185952 Query 6307 GCCCTGCCACCTACCC----GACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAG 6362 |||| ||||| | | | || || || || | ||| |||||||| ||||| | Sbjct 185953 GCCCGCCCACCCGCTCATGTCATCAAGTACTTTGGTTTCGAGCTTGGCGCCCAGACAAAC 186012 Query 6363 TTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAG 6422 | | ||| | || |||| ||| | || || | || | | |||||||||| Sbjct 186013 ACTAGCCCCAACGATGACCGCTGGATCATCAATGGCGCCCACGATGCCAGCAAGCTGCAG 186072 Query 6423 GACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAG 6482 |||| || || ||||| || ||||||||| || || | ||||| | ||||| || Sbjct 186073 GACTACCTCGATGGCTTCATCTCCAAGTTTGTCCTCTGCAAGAAATGCAAGAACCCCGAA 186132 Query 6483 ACCGA 6487 ||||| Sbjct 186133 ACCGA 186137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946644825016