Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Curvularia_20sp._20IFB-Z10_20[genbank_20GCA_5F002161795.1_202017-05-
30] 136 sequences; 33,010,211 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq87 140 2e-28
seq64 140 2e-28
seq93 107 1e-18
seq2 98.7 7e-16
>seq87
Length=8822
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 5673 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 5732
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 5733 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 5767
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| |
Sbjct 7680 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 7739
Query 20007 GGTAATATTTAGCCTTA 20023
||||||||||||||
Sbjct 7740 CCCAATATTTAGCCTTA 7756
>seq64
Length=50038
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1892 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1951
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 1952 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1986
>seq93
Length=1979483
Score = 107 bits (118), Expect = 1e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | || ||| | |||||| |||||||| |||||| || || ||||||||||
Sbjct 928049 TACCACCACGCAGACGGAGCACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAG 928108
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | | ||| |||| || | ||| |||||||| || || ||||| || || || | ||
Sbjct 928109 AGAGAGTACGGCCGTCTTCCAGTTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCTGGGG 928168
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | || || || || ||| || ||| || || | | |||||| | || |
Sbjct 928169 GAATACCCTCCTTATCTTGAATCTTGGACTTGACGTTGTCAATAGTATCCGAAGACTCCA 928228
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| |||| || || || || || ||||| || || ||||| ||||||||
Sbjct 928229 CCTCTAGAGTGATGGTCTTTCCAGTCAACGTCTTGACGAAGATCTGCAT 928277
>seq2
Length=1714173
Score = 98.7 bits (108), Expect = 7e-16
Identities = 206/305 (68%), Gaps = 8/305 (3%)
Strand=Plus/Plus
Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTA 6246
|||| | ||| | |||||||||||||| ||| ||| ||| ||||| | ||||| |
Sbjct 185837 ATGTCACCGACCCCTTCTACCGCTACAAGATGGAGCGTATCCAGTCCAAGATTGAGGGCA 185896
Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGAC 6306
|||| ||||| || || || |||||||||||| || | ||||| ||| ||| |
Sbjct 185897 AGGGCAACGGCATCAAGACTGTCATTGTCAACCTGACCAGTGTCGC--CGGCTCTC--TC 185952
Query 6307 GCCCTGCCACCTACCC----GACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAG 6362
|||| ||||| | | | || || || || | ||| |||||||| ||||| |
Sbjct 185953 GCCCGCCCACCCGCTCATGTCATCAAGTACTTTGGTTTCGAGCTTGGCGCCCAGACAAAC 186012
Query 6363 TTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAG 6422
| | ||| | || |||| ||| | || || | || | | ||||||||||
Sbjct 186013 ACTAGCCCCAACGATGACCGCTGGATCATCAATGGCGCCCACGATGCCAGCAAGCTGCAG 186072
Query 6423 GACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAG 6482
|||| || || ||||| || ||||||||| || || | ||||| | ||||| ||
Sbjct 186073 GACTACCTCGATGGCTTCATCTCCAAGTTTGTCCTCTGCAAGAAATGCAAGAACCCCGAA 186132
Query 6483 ACCGA 6487
|||||
Sbjct 186133 ACCGA 186137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334946644825016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |