Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq274 228 1e-54 seq1257 118 1e-21 >seq274 Length=11782 Score = 228 bits (252), Expect = 1e-54 Identities = 748/1155 (65%), Gaps = 32/1155 (3%) Strand=Plus/Plus Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 53764 |||| ||| |||| || || ||||||||||||| | | ||| || | || |||||| Sbjct 2767 GCAAGAGACGCCAAGTTGCAGACGGCTACCTCATCGGGAGCCGAGTACTCGATAATCTCA 2826 Query 53765 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 53824 ||||| | ||| || || ||||| | || | ||||| ||||| ||| || Sbjct 2827 GTGCACAAGTTAGAACTACGAATAGTTCCAAGGTTCTTCTGATTGCTCTTGCGGTTGCAG 2886 Query 53825 GCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTC 53884 |||||| ||||| ||||| || | || || || |||| | || | ||| || | | Sbjct 2887 TGATCCTTGTAAAGCATGAAGGGATTCCCGGTCTCGGTCTGAGCCTCCAGAATGGCGTAC 2946 Query 53885 CAGACGACACGAGCCTTTA--TTATAG--ATTTGTATCTCTTTTCTCTTTCGTATAGTGT 53940 || | | ||||| | || | | | | || | ||| | | | | || Sbjct 2947 CATAGTTTCTGGGCCTTAACCTTCTGGCGACCACGACCTTCTGCCTCATACTTCTCGT-- 3004 Query 53941 ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA 54000 |||| |||||| || || || | |||| | | | || || || ||| || || Sbjct 3005 --ACAAGGCTTCAAATTCATCACCGTAGACATCGGCAAGACCCGGGCACTCACTAGGGCA 3062 Query 54001 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 54060 ||| | | |||||| |||| | || || || ||||| || || ||||||||||| || Sbjct 3063 CATGAGGGTCCACTCGCCGTTCTTCTCAACACGCTTCATGAAAAGGTCAGGAATCCAGAG 3122 Query 54061 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 54120 ||| | || ||||| | | | ||| || || || ||||| ||| || || Sbjct 3123 AGCGAGGAAAAGATCGCGAGCACGGACTTCTTCTTTACCATGGTTCTTGCGAAGGTCAAG 3182 Query 54121 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTT 54180 |||| | | | ||| ||||| ||||| | ||||| | | | || |||| || Sbjct 3183 GAACTCGAAGACATCCTGGTGCCAGGGTTCGAGATATATAGCAAAGGCACCGGGCCTCTT 3242 Query 54181 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 54240 ||| || ||||| || | |||||| |||||||| || |||||| |||||| || | || Sbjct 3243 GTTACCACCCTGGTCAACGTATCTGGCGGTGTTGTTGAAAACTCGCAACATGGGCACGAT 3302 Query 54241 ACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT 54300 |||||| || | |||||| || |||| ||| || ||| | ||||| || | | Sbjct 3303 ACCATTAGAGGTACCATTCGTACCGGCGATGTATGAGCCAGTAGCACGGAT----CCGGT 3358 Query 54301 TGAT----AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 54356 ||| ||||| || || || || | || ||||| | || || || | || | Sbjct 3359 GGATGTTGAGACCGATACCTCCAGCTGTCTTGGAGATCATGGCACAGGTCTTGAGTGTGT 3418 Query 54357 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 54416 | ||||| ||||| ||||| || ||| |||||| || || || ||| | || | || Sbjct 3419 CGTAGATACCCTCAATACTGTCTTCCTTCATGTCAACTAAGAAGCAGGAGGCCAGCT-GT 3477 Query 54417 GAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 54475 | | | ||||| ||||| || | || || |||||||| || || |||| || Sbjct 3478 GCCTGGGGTGTTCCAGCATTGAAAAGAGTGGGGGAAGCGTGGGTGAAATATTTGCTGGAC 3537 Query 54476 AGTAGATTGTACGTCTCGATAGCTGAGTCTATAT------CCCATTGATGAATTCCTACT 54529 | || ||||| |||| || || |||| || |||| ||| || || Sbjct 3538 ATAAGGTTGTAAGTCTGAATGACTTTCTCTACATTATCGCCCCA------AATACCAACA 3591 Query 54530 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAG 54589 || |||||||| | ||||||||| || ||||| || ||||| | || | ||||| | | Sbjct 3592 GCCACACGCATGATCATGTGCTGTGGCCTTTCTACAATCTTCTCATTGAGCTTCAGTAGG 3651 Query 54590 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 54649 || || | ||||| || || || ||||| || | ||| |||||||| ||||| | | Sbjct 3652 TAAGACCTCTCCAAGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACA 3711 Query 54650 ATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAAT 54708 || | |||| || | || || | | | | || |||| | | | ||| || || Sbjct 3712 ATTGCGGAGTCGAAGTCCTCTTTGTGTCTCATGAC-ACATTCGTATGTCTCCTTAGAGAT 3770 Query 54709 AATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTC 54768 || ||||| | ||| || ||||| |||||||||| | | || | || || Sbjct 3771 CATAGGAGAGGGCTTCATGTTCTTAGGGTTGACATAGTGGTAAAGGTCGCTAATGACAGA 3830 Query 54769 ACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAAT 54828 | || | || ||||||| ||||| || ||||| ||||| || | ||||| || || Sbjct 3831 AGACCATTGCTTCTTTGTTTGCTTGTGGAGGTTTGACACGGCAATACGTGCGGCAAGGAT 3890 Query 54829 GGCATAATCCGGATG 54843 ||||||||||| || Sbjct 3891 AGCATAATCCGGGTG 3905 >seq1257 Length=2089 Score = 118 bits (130), Expect = 1e-21 Identities = 336/508 (66%), Gaps = 19/508 (4%) Strand=Plus/Minus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 || ||||| ||||| ||||| || ||||| || || || || || | | || || || Sbjct 941 TTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTC 882 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATC 23963 |||||||| ||| | || |||||| |||| ||| | | || | || | | Sbjct 881 TCCATGAAGTCGAAGGGGTTGGTAGATCGGTAGAC-CTTCTCGTTGCCGAG--AGCGACC 825 Query 23964 AAT---CTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATA 24020 | | | || ||||| ||||| || ||| ||||||| | ||||| || | Sbjct 824 AGTAGGCGGTCGGCGACGAACTCGATGTATTGCTTCATCAAGTTGGCGTTCATGCCCAGC 765 Query 24021 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 24080 || | || |||||| |||| || ||||||||||| || | ||| || ||||| || Sbjct 764 AGAGCACAGGGCAGAGCCTCAGTCAGGAATTCTTGTTCGATGGCGACAGCATCTGTGAT- 706 Query 24081 ATAGATCTTACTGTTT--CTTCACT--CGGTG-GATACAATAAATGTTTAAACATCAAAC 24135 |||||| ||| | | || | ||| | | | | | ||| | || | | | Sbjct 705 ---GATCTT-CTGGATGACGTCCTTGCCGGGGCGGTTCTTGAGGTGTGTGAATAGTAGGC 650 Query 24136 ATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTC 24195 | ||||| || ||| ||||||||||| | | || | |||||||| || || || | Sbjct 649 AAGCGAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTAAGAC 590 Query 24196 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAA 24255 ||||||| || |||||||| || | ||| || ||||| || |||| ||| ||||| | Sbjct 589 CGGGCATCAGACCACGCTTCTTCAACCAGAAAATGGAGGCGAATGCGCCACTGAAGAAGA 530 Query 24256 TTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG---CTGTCATGTA 24312 | || || || || |||||||||||||| | | || || || | ||||| | Sbjct 529 TACCCTCGACAGCAGCAAAGGCAATAAGACGCTGAGCAAAAGTGGAGTTCTTGTCAGAGA 470 Query 24313 TCCACTTTTGAGCCCAATCGGCCTTCTT 24340 |||| | ||||||| ||||||||||| Sbjct 469 TCCATTGCAGAGCCCAGTCGGCCTTCTT 442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593707172565120