Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1257 179 4e-40 seq600 138 1e-27 seq315 129 6e-25 seq1817 120 3e-22 >seq1257 Length=2089 Score = 179 bits (198), Expect = 4e-40 Identities = 315/455 (69%), Gaps = 3/455 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| |||| |||||| | | || | || | || | |||| | Sbjct 443 AGAAGGCCGACTGGGCTCTGCAATGGATCTCTGACAAGAACTCCACTTTTGCTCAGCGTC 502 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | | ||||| || || |||||||| ||||||| ||| |||||| |||| || | Sbjct 503 TTATTGCCTTTGCTGCTGTCGAGGGTATCTTCTTCAGTGGCGCATTCGCCTCCATTTTCT 562 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 || | ||||| || || || |||||||| || || ||| ||||||||||||||| | | Sbjct 563 GGTTGAAGAAGCGTGGTCTGATGCCCGGTCTTACCTTCTCCAACGAGCTCATCTCTCGTG 622 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 ||||||||||||| ||||| || || | || |||| || | | | || || Sbjct 623 ACGAGGGTCTGCACACTGACTTCGCTTGCCTACTATTCACACACCTCAAGAACCGCCCCG 682 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || || | || | ||||| |||| || || ||||||||||| || ||||| | Sbjct 683 GCAAGGACGTCATCCAGAAGATCATCACAGATGCTGTCGCCATCGAACAAGAATTCCTGA 742 Query 117282 CCGAAGCGCTG-CCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATC 117340 | || || ||| || |||| ||||||||| | || | | |||| |||||||||| Sbjct 743 CTGAGGCTCTGCCCTGTGC-TCTGCTGGGCATGAACGCCAACTTGATGAAGCAATACATC 801 Query 117341 GAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCC 117400 ||||||||||||||| | || ||| ||| || | | || ||| |||| | || Sbjct 802 GAGTTCGTCGCCGACCGCCTACTGGTCGCTCTCGGCAACGAGAAGGTCTACCGATCTACC 861 Query 117401 AACCCGCTGGACTTTATGAACCTCATCT-CCTTGG 117434 ||||| | ||||| ||| | ||||| |||||| Sbjct 862 AACCCCTTCGACTTCATGGAGAACATCTCCCTTGG 896 Score = 111 bits (122), Expect = 2e-19 Identities = 196/285 (69%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||| ||| || || |||||||| | || ||| | |||||| Sbjct 36 ATCTGGCAAATGTACAAGAAGCACGAAGCATCCTTCTGGACTGCTGAAGAGATCGACCTG 95 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| ||||||| | || | || || ||||| || || Sbjct 96 TCCAAGGATCTTCACGACTGGAACAACCGACTCAATGATGACGAGAAGTTCTTTGTCTCT 155 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || ||||| || ||||| |||||||| ||||| ||||| || || ||||| Sbjct 156 CACATTCTTGCCTTCTTTGCCGCGTCGGACGGCATTGTCAATGAGAACCTAGTTGAGCGA 215 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| || || ||| | | |||||||| ||||||||||| || |||||| ||| Sbjct 216 TTCAGCGGCGAAGTTCAGATCCCTGAGGCGCGATGCTTCTACGGTTTCCAGATCATGATG 275 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | ||||| || | || || ||||| ||||| ||| Sbjct 276 GAGAACATCCACTCCGAGACTTACTCCCTGCTCATTGACACTTAC 320 >seq600 Length=9993 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || || |||||| | || || || | | | Sbjct 840 ATGCAGATTTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTAGC 781 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || |||| ||||| ||||| |||||| | ||||| Sbjct 780 GACACCATCGATAATGTCAAGTCGAAGATTCAGGACAAGGAGGGAATCCCCCCCGACCAA 721 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | |||| ||||||||| ||||| || || | || |||||| |||||||||| Sbjct 720 CAGCGATTAATCTTCGCGGGCAAGCAGCTCGAAGATGGTCGAACCCTCTCCGACTACAAC 661 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||||| ||| || || || ||| | ||| Sbjct 660 ATCCAGAAGGAGAGCACCCTCCACCTTGTGCTCCGC 625 >seq315 Length=5603 Score = 129 bits (142), Expect = 6e-25 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 40694 AAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGA 40751 ||||| ||||| || || || |||||||| ||||||||| |||| || || | |||| Sbjct 1299 AAATAGCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCGA 1240 Query 40752 CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811 || | | | | ||||| || || | ||||| ||||| |||||| | ||||| || Sbjct 1239 CACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAACA 1180 Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871 || || |||| ||| || || ||||| || |||| || |||||| |||||||||||| Sbjct 1179 GCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTCTCCGACTACAACAT 1120 Query 40872 CCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||| | || || || || ||| Sbjct 1119 CCAGAAGGAGTCTACCCTCCACCTGGTG 1092 >seq1817 Length=26529 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || | || || || || ||||| | || || ||| | | Sbjct 16808 AATGCAGATCTTCGTCAAGACCTTGACAGGAAAGACGATCACTCTGGAGGTTGAATCATC 16867 Query 40749 CGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | || |||| ||||| || || | ||||| || ||||| ||| | |||| Sbjct 16868 GGACACGATTGACAACG-TCAAGAGCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACC 16926 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | |||||||| |||| ||| || || ||| |||| || | ||||| || | |||||||| Sbjct 16927 AACAACGACTTATCTTCGCTGGTAAGCAGTTGGAGGATGGTCGCACTCTAAGCGACTACA 16986 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||| | |||||||| Sbjct 16987 ACATCCAGAAGGAGTCGACGCTGCA 17011 Score = 116 bits (128), Expect = 4e-21 Identities = 159/218 (73%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 40683 CCGAAAA-ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCG 40741 |||| || ||||| || ||||| || || ||||| ||||| ||||||||| | || || | Sbjct 16054 CCGACAACATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTGG 16113 Query 40742 AAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCC 40800 | || |||||| | | | |||| |||| || |||| || || || ||||| || Sbjct 16114 AGTCCTCCGACACCATCGACAACG-TCAAATCCAAGATTCAGGATAAGGAAGGCATTCCT 16172 Query 40801 GCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 40860 | |||||||| ||| | || | ||| || || || || || || | ||||| || | | Sbjct 16173 CCTGACCAGCAGCGATTGATTTTCGCTGGAAAGCAACTTGAGGATGGTCGCACTCTGAGC 16232 Query 40861 GACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||||||||| |||| || || || || Sbjct 16233 GACTACAACATCCAGAAGGAATCCACCCTCCACCTCGT 16270 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| ||||||||| | || || || | | Sbjct 16581 ATGCAGATCTTTGTGAAGACTTTGACCGGCAAGACCATCACCTTAGAGGTTGAGTCGTCA 16640 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| || || | ||||| ||||| || ||| | || || Sbjct 16641 GACACCATCGATAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCCCCCGATCAA 16700 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||| |||| ||||| || |||||||| |||| || || |||| |||||||||| Sbjct 16701 CAGCGACTTATCTTTGCGGGTAAGCAGCTGGAAGACGGCCGAACTCTCAGCGACTACAAC 16760 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| | || || ||||| || Sbjct 16761 ATCCAGAAGGAATCTACCCTCCATCTCGT 16789 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 40694 AAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA 40753 ||| | |||| || || || || || || ||||||||| |||| || || | | |||| Sbjct 16357 AAACAGTCGTCAAGACCCTTACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCGGACA 16416 Query 40754 GCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAA 40812 | | |||| | ||| || || | ||||| ||||| ||||| | ||||| || Sbjct 16417 CTATCGACAACGTT-AAGTCGAAGATCCAAGACAAGGAGGGTATCCCTCCCGACCAACAG 16475 Query 40813 CGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATC 40872 ||| | || | ||| ||||| ||||| || || | || ||||| |||||||||||| Sbjct 16476 CGATTGATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGAACCCTATCCGACTACAACATT 16535 Query 40873 CAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||| | || || ||||| || Sbjct 16536 CAGAAGGAGTCTACTCTCCATCTTGT 16561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515206680173440