Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1817 105 8e-18 seq600 102 9e-17 >seq1817 Length=26529 Score = 105 bits (116), Expect = 8e-18 Identities = 167/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008 |||||||||| || | | ||| | |||||| |||| || |||||| || || |||| Sbjct 17043 CCTATTGTCCACCACGGAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGT 16984 Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068 | || ||||| || | || || | ||||||||||||||| || ||||| || |||| Sbjct 16983 AGTCGCTTAGAGTGCGACCATCCTCCAACTGCTTACCAGCGAAGATAAGTCGTTGTTGGT 16924 Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTC 43127 | | || | || ||||||||| ||| || |||| ||| | | | |||||| Sbjct 16923 CAGGGGGAATGCCTTCCTTGTCCTGGATCTTGCTCTTGA-CGTTGTCAATCGTGTCCGAT 16865 Query 43128 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 ||||| || || | ||||| || || || || | ||||| || ||||| |||||| Sbjct 16864 GATTCAACCTCCAGAGTGATCGTCTTTCCTGTCAAGGTCTTGACGAAGATCTGCATT 16808 Score = 100 bits (110), Expect = 3e-16 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || |||||| || | || || || ||||| |||||||| Sbjct 16252 TCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCATCCTCAAGTTGCTTTCCAGCGAAA 16193 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || | |||||||||||| | || | || ||||| ||| ||| | || | ||||| ||| Sbjct 16192 ATCAATCGCTGCTGGTCAGGAGGAATGCCTTCCTTATCC-TGAATCTTGGATTTGA-CGT 16135 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || ||||| || | |||||||| ||||| || || ||||| | Sbjct 16134 TGTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGA 16075 Query 43171 CAAAGATTTGCATTTT 43186 | ||||| ||||| || Sbjct 16074 CGAAGATCTGCATGTT 16059 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || ||||| || |||| || ||||||||||| || || Sbjct 16771 TCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCTTCCAGCTGCTTACCCGCAAAG 16712 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || |||||||| || |||| || | | |||||||||| ||| || || | | Sbjct 16711 ATAAGTCGCTGTTGATCGGGGGGAATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTA 16652 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| ||| || || || | |||||||| ||||| || | ||||| ||| Sbjct 16651 TCGATGGTGTCTGACGACTCAACCTCTAAGGTGATGGTCTTGCCGGTCAAAGTCTTCACA 16592 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 16591 AAGATCTGCAT 16581 >seq600 Length=9993 Score = 102 bits (112), Expect = 9e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || ||||| || | || || || | || || |||||||| || Sbjct 644 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCATCTTCGAGCTGCTTGCCC 703 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTT 43105 ||||| || | |||||| ||||||| || | | |||||||||| ||| | || | || Sbjct 704 GCGAAGATTAATCGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCC-TGAATCTTCGACTT 762 Query 43106 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 || | | | |||||||| || ||||| || | ||||| || || ||||| || || Sbjct 763 GACATTATCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGT 822 Query 43166 CTTTACAAAGATTTGCAT 43183 ||| || || || ||||| Sbjct 823 CTTGACGAAAATCTGCAT 840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571803704832320