Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq600 127 2e-24 seq315 123 2e-23 seq1817 118 8e-22 >seq600 Length=9993 Score = 127 bits (140), Expect = 2e-24 Identities = 156/212 (74%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || |||||||||||||| |||||||||||| || ||| | || || || || Sbjct 637 GTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCATCTTCGAGCTG 696 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| || || |||||||||||||| || | |||||||||||| ||| || Sbjct 697 CTTGCCCGCGAAGATTAATCGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGAATCTT 756 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | | ||||||||| | ||| || ||||| ||||| Sbjct 757 CGACTTGACATTATCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTACCCGT 816 Query 45313 CAGAGTCTTCACAAAGATTTGCATG-TTGCCT 45343 || ||||| || || || |||||| |||||| Sbjct 817 GAGGGTCTTGACGAAAATCTGCATGATTGCCT 848 >seq315 Length=5603 Score = 123 bits (136), Expect = 2e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| || || |||| || Sbjct 1093 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCG 1152 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| |||| |||||||||||||| || | ||||||||||||| Sbjct 1153 AGCTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCGGGGGGGATACCCTCCTTGTCCTGG 1212 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||| | ||| || |||||| Sbjct 1213 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTG 1272 Query 45308 CCCGTCAGAGTCTTCACAAAG 45328 |||||||| |||||||| ||| Sbjct 1273 CCCGTCAGGGTCTTCACGAAG 1293 >seq1817 Length=26529 Score = 118 bits (130), Expect = 8e-22 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||| |||||||||||| |||| |||| | || || ||||| Sbjct 16265 GTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCATCCTCAAGTTG 16206 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| ||||| ||||| ||||| ||||| ||||| | || ||||| ||| ||| || Sbjct 16205 CTTTCCAGCGAAAATCAATCGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTT 16146 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 || || | | | |||| ||||||||| | ||| || |||||||| || Sbjct 16145 GGATTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGT 16086 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 || ||||| || ||||| ||||||||| Sbjct 16085 GAGGGTCTTGACGAAGATCTGCATGTTG 16058 Score = 104 bits (114), Expect = 2e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||||||| || || | || || || || || |||||||| Sbjct 16544 CTCCTTCTGAATGTTGTAGTCGGATAGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAA 16485 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| ||||||||||||||||| | |||||||||||| || || |||||| Sbjct 16484 AATCAATCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCTTGGATCTTCGACTTAACGTT 16425 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | ||||| | ||||||||| | ||| || ||||| || || || ||||| || Sbjct 16424 GTCGATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTGAC 16365 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||||||| ||||||||| |||||||||||| | || |||| | || ||| Sbjct 17017 ACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTTAGAGTGCGACCATCCTCC 16958 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || || ||||| || | || |||||||| || || | || ||||||||| Sbjct 16957 AACTGCTTACCAGCGAAGATAAGTCGTTGTTGGTCAGGGGGAATGCCTTCCTTGTCCTGG 16898 Query 45248 ATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || ||| | || | || | ||||| || ||||||| || |||||||| Sbjct 16897 ATCTTGCTCTTGA-CGTTGTCAATCGTGTCCGATGATTCAACCTCCAGAGTGATCGTCTT 16839 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || ||||| ||||| Sbjct 16838 TCCTGTCAAGGTCTTGACGAAGATCTGCAT 16809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395065839680824