Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1257 118 9e-22 seq1817 111 1e-19 >seq1257 Length=2089 Score = 118 bits (130), Expect = 9e-22 Identities = 238/349 (68%), Gaps = 8/349 (2%) Strand=Plus/Plus Query 57958 CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCA 58017 |||| || || || | || || || || || || ||||| ||||| ||||| ||| Sbjct 485 CCACTTTTGCTCAGCGTCTTATTGCCTTTGCTGCTGTCGAGGGTATCTTCTTCAGTGGCG 544 Query 58018 GCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCA 58077 || || | || || ||| ||||||| || || ||||||||||| || || || || Sbjct 545 CATTCGCCTCCATTTTCTGGTTGAAGAAGCGTGGTCTGATGCCCGGTCTTACCTTCTCCA 604 Query 58078 ACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTC 58137 ||||| | || || || ||||||||||| || ||||| || || |||||| || || | Sbjct 605 ACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTCGCTTGCCTA--CTATTCAC 662 Query 58138 ACATTGTCAATAAACCGACGCG----GGATCGCATCTTGGACATTATCACCGAGGCGGTC 58193 ||| |||| ||||| | || ||| |||| | | || ||||| || || ||| Sbjct 663 ACA-CCTCAA-GAACCGCCCCGGCAAGGACGTCATCCAGAAGATCATCACAGATGCTGTC 720 Query 58194 GCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAAT 58253 || |||||| | || || | || || || || || || |||| || |||||| Sbjct 721 GCCATCGAACAAGAATTCCTGACTGAGGCTCTGCCCTGTGCTCTGCTGGGCATGAACGCC 780 Query 58254 GATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCG 58302 | |||||| | ||||| ||||| || |||||| | || || ||| Sbjct 781 AACTTGATGAAGCAATACATCGAGTTCGTCGCCGACCGCCTACTGGTCG 829 >seq1817 Length=26529 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || ||||| ||||| || || ||||| || |||||| | || || || | Sbjct 16059 AACATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTGGAGTCC 16118 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | |||||| | || ||| ||||||||| | || || ||| Sbjct 16119 TCCGACACCATCGACAACGTCAAATCCAAGATTCAGGATAAGGAAGGCATTCCTCCTGAC 16178 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| | || |||||||| || || | || || | ||| ||||||| || Sbjct 16179 CAGCAGCGATTGATTTTCGCTGGAAAGCAACTTGAGGATGGTCGCACTCTGAGCGACTAC 16238 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || || ||||| || || || || || ||| Sbjct 16239 AACATCCAGAAGGAATCCACCCTCCACCTCGTCCTT 16274 Score = 111 bits (122), Expect = 1e-19 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||||| || |||||||| | || |||||| | || Sbjct 16809 ATGCAGATCTTCGTCAAGACCTTGACAGGAAAGACGATCACTCTGGAGGTTGAATCATCG 16868 Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | || | ||||| ||| || | | ||||||||||||| | || || ||| Sbjct 16869 GACACGATTGACAACGTCAA---GAGCAAGATCCAGGACAAGGAAGGCATTCCCCCTGAC 16925 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || || || || |||||||| || |||||||| || | ||| | ||||| || Sbjct 16926 CAACAACGACTTATCTTCGCTGGTAAGCAGTTGGAGGATGGTCGCACTCTAAGCGACTAC 16985 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || || || ||||| || || |||| ||| Sbjct 16986 AACATCCAGAAGGAGTCGACGCTGCACTTGGTGCTT 17021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445755567876480