Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq274 226 4e-54 seq1257 123 3e-23 >seq274 Length=11782 Score = 226 bits (250), Expect = 4e-54 Identities = 750/1156 (65%), Gaps = 34/1156 (3%) Strand=Plus/Plus Query 62943 GCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 63002 |||| ||| |||| || || ||||||||||||| | | ||| || | || |||||| Sbjct 2767 GCAAGAGACGCCAAGTTGCAGACGGCTACCTCATCGGGAGCCGAGTACTCGATAATCTCA 2826 Query 63003 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63062 ||||| | ||| || |||||||| | || | ||||| ||||| ||| || Sbjct 2827 GTGCACAAGTTAGAACTACGAATAGTTCCAAGGTTCTTCTGATTGCTCTTGCGGTTGCAG 2886 Query 63063 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63122 |||||| ||||| ||||| ||| | || || || |||||| || | ||| || | | Sbjct 2887 TGATCCTTGTAAAGCATGAAGGGATTCCCGGTCTCGGTCTGAGCCTCCAGAATGGCGTAC 2946 Query 63123 CAGACGACTC-GAGCCTTTA--TTATAG--ATTTGTATCTCCTTTCTCTTTCGTATAGAG 63177 || | | || | ||||| | || | | | | || || ||| | | | | | Sbjct 2947 CATA-GTTTCTGGGCCTTAACCTTCTGGCGACCACGACCTTCTGCCTCATACTTCTCG-- 3003 Query 63178 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGAC 63237 ||||| ||| || || || || | |||| | | | | || || ||| || | Sbjct 3004 --TACAAGGCTTCAAATTCATCACCGTAGACATCGGCAAGACCCGGGCACTCACTAGGGC 3061 Query 63238 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63297 |||| | | |||||| |||| | || || || ||||| || || ||||||||||| | Sbjct 3062 ACATGAGGGTCCACTCGCCGTTCTTCTCAACACGCTTCATGAAAAGGTCAGGAATCCAGA 3121 Query 63298 GAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63357 |||| | || ||||| | | | ||| || || || ||||| ||| || | Sbjct 3122 GAGCGAGGAAAAGATCGCGAGCACGGACTTCTTCTTTACCATGGTTCTTGCGAAGGTCAA 3181 Query 63358 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63417 ||||| | | | ||| ||||| ||||| | ||||| || | | || |||| | Sbjct 3182 GGAACTCGAAGACATCCTGGTGCCAGGGTTCGAGATATATAGCAAAGGCACCGGGCCTCT 3241 Query 63418 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63477 |||| || ||||| || | |||||| |||||||| || |||||| |||||| || | | Sbjct 3242 TGTTACCACCCTGGTCAACGTATCTGGCGGTGTTGTTGAAAACTCGCAACATGGGCACGA 3301 Query 63478 TACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAA 63537 |||| || || ||||||| ||||||| ||| || ||| | ||||| || | Sbjct 3302 TACCATTAGAGGTACCATTCGTACCGGCGATGTATGAGCCAGTAGCACGGAT----CCGG 3357 Query 63538 TTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593 | ||| ||||| || || || || | || ||||| | || || || | ||| Sbjct 3358 TGGATGTTGAGACCGATACCTCCAGCTGTCTTGGAGATCATGGCACAGGTCTTGAGTGTG 3417 Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653 || ||||| || || || || || || |||||| || || || ||| | || | | Sbjct 3418 TCGTAGATACCCTCAATACTGTCTTCCTTCATGTCAACTAAGAAGCAGGAGGCCAGCT-G 3476 Query 63654 TGAC-GAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63712 || | | | ||||| ||||| || | || || |||||||| || || |||| || Sbjct 3477 TGCCTGGGGTGTTCCAGCATTGAAAAGAGTGGGGGAAGCGTGGGTGAAATATTTGCTGGA 3536 Query 63713 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT------CCCATTGATGAATTCCTAC 63766 | || ||||| |||| ||| || |||| || |||| ||| || || Sbjct 3537 CATAAGGTTGTAAGTCTGAATGACTTTCTCTACATTATCGCCCCA------AATACCAAC 3590 Query 63767 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAA 63826 || |||||||| | ||||||||| || ||||| ||||| || | || | |||| | Sbjct 3591 AGCCACACGCATGATCATGTGCTGTGGCCTTTCTACAATCTTCTCATTGAGCTTCAGTAG 3650 Query 63827 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 63886 ||| || | ||||| || || || ||||| || | ||| |||||||| ||||| | Sbjct 3651 GTAAGACCTCTCCAAGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGAC 3710 Query 63887 AATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTT-GAAA 63945 ||| | || | || | || || | | | | || | || | | | ||| || | Sbjct 3711 AATTGCGGAGTCGAAGTCCTCTTTGTGTCTCATGAC-ACATTCGTATGTCTCCTTAGAGA 3769 Query 63946 TAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTT 64005 | || ||||| | ||| || ||||| || ||||||| | | | || || || Sbjct 3770 TCATAGGAGAGGGCTTCATGTTCTTAGGGTTGACATAGTGGTAAAGGTCGCTAATGACAG 3829 Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 | || | || ||||||| |||||| || ||||| | ||| || | ||||| || | Sbjct 3830 AAGACCATTGCTTCTTTGTTTGCTTGTGGAGGTTTGACACGGCAATACGTGCGGCAAGGA 3889 Query 64066 TGGCATAATCCGGATG 64081 | ||||||||||| || Sbjct 3890 TAGCATAATCCGGGTG 3905 >seq1257 Length=2089 Score = 123 bits (136), Expect = 3e-23 Identities = 335/507 (66%), Gaps = 17/507 (3%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 || ||||| ||||| ||||| || ||||| || || || || || | | || || || Sbjct 941 TTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTC 882 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 |||||||| || || || |||||| ||| | || | || | || | | Sbjct 881 TCCATGAAGTCGAAGGGGTTGGTAGATCGGTAGACCTTCTCGTTGCCGAG---AGCGACC 825 Query 33411 AAT---CTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATG 33467 | | | || |||||||| || || ||| ||||||| | ||||| || | Sbjct 824 AGTAGGCGGTCGGCGACGAACTCGATGTATTGCTTCATCAAGTTGGCGTTCATGCCCAGC 765 Query 33468 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATA 33527 || | || |||||| |||| || ||||||||||| |||| || |||| ||| || Sbjct 764 AGAGCACAGGGCAGAGCCTCAGTCAGGAATTCTTGTTCGATGGCGACAGCATCTGTGATG 705 Query 33528 ATAAATCTA----ACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACA 33583 || ||| ||| | ||| | || || | | | ||| | || | | || Sbjct 704 ATCT-TCTGGATGACG--TCCTTGCCGGGGCGGTTCTTG-AGGTGTGTGAATAGTAGGCA 649 Query 33584 TGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCC 33643 ||||| || ||||||||||||||| | | || | ||||| || || || || || Sbjct 648 AGCGAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTAAGACC 589 Query 33644 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGAT 33703 |||||| || |||||||| || | ||| || ||||| ||||||| || |||||||| Sbjct 588 GGGCATCAGACCACGCTTCTTCAACCAGAAAATGGAGGCGAATGCGCCACTGAAGAAGAT 529 Query 33704 TCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG---CTGTCATGTAT 33760 || || || ||||||||||||||||| | || || || || | ||||| || Sbjct 528 ACCCTCGACAGCAGCAAAGGCAATAAGACGCTGAGCAAAAGTGGAGTTCTTGTCAGAGAT 469 Query 33761 CCACTTTTGAGCCCAATCGGCCTTCTT 33787 ||| | ||||||| ||||||||||| Sbjct 468 CCATTGCAGAGCCCAGTCGGCCTTCTT 442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629802295432320