Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq274 241 2e-58 seq1257 105 9e-18 >seq274 Length=11782 Score = 241 bits (266), Expect = 2e-58 Identities = 753/1156 (65%), Gaps = 34/1156 (3%) Strand=Plus/Plus Query 65736 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 65795 |||| ||| |||| || || ||||||||||||| | | ||| || | || |||||| Sbjct 2767 GCAAGAGACGCCAAGTTGCAGACGGCTACCTCATCGGGAGCCGAGTACTCGATAATCTCA 2826 Query 65796 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 65855 ||||| | ||| || || ||||| | || | ||||| ||||| ||| || Sbjct 2827 GTGCACAAGTTAGAACTACGAATAGTTCCAAGGTTCTTCTGATTGCTCTTGCGGTTGCAG 2886 Query 65856 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 65915 |||||| ||||| ||||| ||| | || || || |||||| || | ||| || | | Sbjct 2887 TGATCCTTGTAAAGCATGAAGGGATTCCCGGTCTCGGTCTGAGCCTCCAGAATGGCGTAC 2946 Query 65916 CAGACGACTC-GAGCCTTTA--TTATAG--ATTTGTATCTCTTTTCTCTTTCGTATAGTG 65970 || | | || | ||||| | || | | | | || | ||| | | | | || Sbjct 2947 CATA-GTTTCTGGGCCTTAACCTTCTGGCGACCACGACCTTCTGCCTCATACTTCTCGT- 3004 Query 65971 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGAC 66030 |||| ||| || || || || | |||| | | | || || || ||| || | Sbjct 3005 ---ACAAGGCTTCAAATTCATCACCGTAGACATCGGCAAGACCCGGGCACTCACTAGGGC 3061 Query 66031 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 66090 |||| | | |||||| |||| | || || || ||||| || || ||||||||||| | Sbjct 3062 ACATGAGGGTCCACTCGCCGTTCTTCTCAACACGCTTCATGAAAAGGTCAGGAATCCAGA 3121 Query 66091 GAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 66150 |||| | || | ||| | | | ||| || || || ||||| ||| || | Sbjct 3122 GAGCGAGGAAAAGATCGCGAGCACGGACTTCTTCTTTACCATGGTTCTTGCGAAGGTCAA 3181 Query 66151 GGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 66210 ||||| | | | ||| | ||||| ||||| | ||||| || | | || |||| | Sbjct 3182 GGAACTCGAAGACATCCTGGTGCCAGGGTTCGAGATATATAGCAAAGGCACCGGGCCTCT 3241 Query 66211 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 66270 |||| || ||||| || | |||||| |||||||| || |||||| |||||| || | | Sbjct 3242 TGTTACCACCCTGGTCAACGTATCTGGCGGTGTTGTTGAAAACTCGCAACATGGGCACGA 3301 Query 66271 TACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAA 66330 ||||||| || |||||||| || |||| ||| || ||| | ||||| || | Sbjct 3302 TACCATTAGAGGTACCATTCGTACCGGCGATGTATGAGCCAGTAGCACGGAT----CCGG 3357 Query 66331 TTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 66386 | ||| ||||| || || || || | || ||||| | || || || | || Sbjct 3358 TGGATGTTGAGACCGATACCTCCAGCTGTCTTGGAGATCATGGCACAGGTCTTGAGTGTG 3417 Query 66387 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 66446 || ||||| ||||| ||||| || ||| |||||| || || || ||| | || || Sbjct 3418 TCGTAGATACCCTCAATACTGTCTTCCTTCATGTCAACTAAGAAGCAGGAGGCCAGCTG- 3476 Query 66447 TGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 66505 || | | ||||| ||||| || | || || |||||||| || || |||| || Sbjct 3477 TGCCTGGGGTGTTCCAGCATTGAAAAGAGTGGGGGAAGCGTGGGTGAAATATTTGCTGGA 3536 Query 66506 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT------CCCATTGATGAATTCCTAC 66559 | || ||||| |||| ||| || |||| || |||| ||| || || Sbjct 3537 CATAAGGTTGTAAGTCTGAATGACTTTCTCTACATTATCGCCCCA------AATACCAAC 3590 Query 66560 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAA 66619 || |||||||| | ||||||||| || ||||| || ||||| | || | |||| | Sbjct 3591 AGCCACACGCATGATCATGTGCTGTGGCCTTTCTACAATCTTCTCATTGAGCTTCAGTAG 3650 Query 66620 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 66679 ||| || | ||||| || || || ||||| || | ||| |||||||| ||||| | Sbjct 3651 GTAAGACCTCTCCAAGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGAC 3710 Query 66680 AATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAA 66738 ||| | |||| || | || || | | | | || |||| | | | ||| || | Sbjct 3711 AATTGCGGAGTCGAAGTCCTCTTTGTGTCTCATGAC-ACATTCGTATGTCTCCTTAGAGA 3769 Query 66739 TAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTT 66798 | || ||||| | ||| || ||||| |||||||||| | | | || || || Sbjct 3770 TCATAGGAGAGGGCTTCATGTTCTTAGGGTTGACATAGTGGTAAAGGTCGCTAATGACAG 3829 Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 | || | || ||||||| ||||| || ||||| ||||| || | ||||| | | Sbjct 3830 AAGACCATTGCTTCTTTGTTTGCTTGTGGAGGTTTGACACGGCAATACGTGCGGCAAGGA 3889 Query 66859 TGGCATAATCCGGATG 66874 | ||||||||||| || Sbjct 3890 TAGCATAATCCGGGTG 3905 Score = 86.0 bits (94), Expect = 8e-12 Identities = 318/496 (64%), Gaps = 7/496 (1%) Strand=Plus/Plus Query 64869 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 64928 ||||| ||||||||||| || ||||| ||||| || |||| ||| |||||||| || Sbjct 1891 GTACGGAGATAGTACATGCCAGTTTTCAGACCAAGCTTCCAGCCGGTGAAATGCATGCTG 1950 Query 64929 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 64988 || | || | | || ||| ||||| || || | ||||| |||||||| Sbjct 1951 GTAATCTTCCCCATAGTGGGCTCTCTCATATGAATGTTTAGTGATTGGGATTGATCGACA 2010 Query 64989 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 65048 ||||| || | ||| || ||||| | | ||| || || | |||||||||| || Sbjct 2011 AAGGCACCACGGTCAGCGGCCATCTGGACGATGGTTCGCTGAGAGATTTCCCAAACGGTC 2070 Query 65049 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCT 65105 || |||| || | || | |||| ||||| | |||||||| || ||||| || Sbjct 2071 TTGTAAAGAGCTTTGAGGTCCGCAGGAATGTTTGGAATGTTCTGAATTGAACCACCTTCG 2130 Query 65106 GCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 65165 || || || | ||||| || ||| ||| | | || | | | || Sbjct 2131 GCAATGATGCGGTTCTTCATGCTGTCAGACCAGAGACCCATGTCAACAAGGTCCTTGAGC 2190 Query 65166 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 65225 | || ||||| ||||| || || |||| | || | |||| |||||| || Sbjct 2191 AACCAAGGGTTAACAACTTGGAACTCGCCAGCAAGGACACGACGAGAGTAAATGTTCGAT 2250 Query 65226 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 65285 || || || || | | || || || |||| ||| || | ||| ||||| |||||| Sbjct 2251 GTGTAGGGCTCGAAGCATTCGTTGTTACCCAGAATCTGGGAAGTGCTAGCAGTGGGCATA 2310 Query 65286 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTT--CTGATTTTATCTTTTAGAGGTT 65343 || || || || || || |||| | ||| ||||| |||||| || || || Sbjct 2311 GGAGCAACTAACAAGCTGTTTCGTACACC--ATGTTGCTTGATTTGCTCCTTAAGGCTAG 2368 Query 65344 CCCAATTCCAAAGATC 65359 |||||| ||| ||||| Sbjct 2369 CCCAATCCCAGAGATC 2384 >seq1257 Length=2089 Score = 105 bits (116), Expect = 9e-18 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| || ||| ||||||||||| | | || | |||||||| || || || Sbjct 650 CAAGCGAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTAAGA 591 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 |||||||| || |||||||| || | ||| || ||||| || |||| ||| ||||| Sbjct 590 CCGGGCATCAGACCACGCTTCTTCAACCAGAAAATGGAGGCGAATGCGCCACTGAAGAAG 531 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGT 36334 || || || || || |||||||||||||| | || || || || ||||| Sbjct 530 ATACCCTCGACAGCAGCAAAGGCAATAAGACGCTGAGCAAAAGTGGAGTTCTTGTCAGAG 471 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTT 36363 ||||| | ||||||| ||||||||||| Sbjct 470 ATCCATTGCAGAGCCCAGTCGGCCTTCTT 442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658156806400960