Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq274 208 1e-48 seq1257 111 2e-19 >seq274 Length=11782 Score = 208 bits (230), Expect = 1e-48 Identities = 741/1147 (65%), Gaps = 16/1147 (1%) Strand=Plus/Plus Query 71698 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCA 71757 |||| ||| |||| || || ||||||||||||| | | | | || | ||||| ||| Sbjct 2767 GCAAGAGACGCCAAGTTGCAGACGGCTACCTCATCGGGAGCCGAGTACTCGATAATCTCA 2826 Query 71758 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 71817 ||||| | ||| || || ||||| | || | ||||| ||||| ||| || Sbjct 2827 GTGCACAAGTTAGAACTACGAATAGTTCCAAGGTTCTTCTGATTGCTCTTGCGGTTGCAG 2886 Query 71818 GCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 71877 |||||| ||||| || || ||| | || || || |||||| || | ||| || | | Sbjct 2887 TGATCCTTGTAAAGCATGAAGGGATTCCCGGTCTCGGTCTGAGCCTCCAGAATGGCGTAC 2946 Query 71878 CAGACGACTCGAGCCTTTATTATATTCTTGT-ATCTCTT--TTCTCTTTCGTATTGTGTA 71934 || | | || | | ||| | |||| | | | | |||| || || | Sbjct 2947 CATA-GTTTCTGGGCCTTA--ACCTTCTGGCGACCACGACCTTCTGCCTCATACTTCTCG 3003 Query 71935 TATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACAC 71994 || || ||| || || || || | ||| | | | || || || ||| | || ||| Sbjct 3004 TACAAGGCTTCAAATTCATCACCGTAGACATCGGCAAGACCCGGGCACTCACTAGGGCAC 3063 Query 71995 ATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 72054 || | | |||||| || | | | || || ||||| || || ||||||||||| ||| Sbjct 3064 ATGAGGGTCCACTCGCCGTTCTTCTCAACACGCTTCATGAAAAGGTCAGGAATCCAGAGA 3123 Query 72055 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 72114 || | || ||||| | | | || || || || ||||| ||| || ||| Sbjct 3124 GCGAGGAAAAGATCGCGAGCACGGACTTCTTCTTTACCATGGTTCTTGCGAAGGTCAAGG 3183 Query 72115 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTG 72174 ||| | | | ||| ||||| ||||| | ||||| || | | || |||| ||| Sbjct 3184 AACTCGAAGACATCCTGGTGCCAGGGTTCGAGATATATAGCAAAGGCACCGGGCCTCTTG 3243 Query 72175 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 72234 || || ||||| || | |||||| |||||||| || |||||| |||||| || | ||| Sbjct 3244 TTACCACCCTGGTCAACGTATCTGGCGGTGTTGTTGAAAACTCGCAACATGGGCACGATA 3303 Query 72235 CCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATT 72294 ||||| || | |||||| || |||| ||| || ||| | ||||| || | || Sbjct 3304 CCATTAGAGGTACCATTCGTACCGGCGATGTATGAGCCAGTAGCACGGATCCGGTGGATG 3363 Query 72295 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 72354 ||||| || || || || | || ||||| | || || || | || || ||| Sbjct 3364 TTGAGACCGATACCTCCAGCTGTCTTGGAGATCATGGCACAGGTCTTGAGTGTGTCGTAG 3423 Query 72355 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC-G 72413 || ||||| ||||| || ||| |||||| || || || ||| | || | ||| | | Sbjct 3424 ATACCCTCAATACTGTCTTCCTTCATGTCAACTAAGAAGCAGGAGGCCAGCT-GTGCCTG 3482 Query 72414 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAG 72473 ||||| ||||| || | || || |||||||| || || |||| |||| || Sbjct 3483 GGGTGTTCCAGCATTGAAAAGAGTGGGGGAAGCGTGGGTGAAATATTTGCTGGACATAAG 3542 Query 72474 ATTGTACGTCTCAATAGCTGATTCTA---TATCCCATTGATGTATTCCTACCGCGACACG 72530 ||||| |||| ||| || |||| |||| | | || || || || ||||| Sbjct 3543 GTTGTAAGTCTGAATGACTTTCTCTACATTATCGCCCCAA---ATACCAACAGCCACACG 3599 Query 72531 CATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTT 72590 ||| | ||| ||||| || ||||| || ||||| | ||| | |||| | ||| || | Sbjct 3600 CATGATCATGTGCTGTGGCCTTTCTACAATCTTCTCATTGAGCTTCAGTAGGTAAGACCT 3659 Query 72591 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 72650 ||||| || || || ||||| || | ||| |||||||| ||||| | ||| | || Sbjct 3660 CTCCAAGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACAATTGCGGA 3719 Query 72651 ATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAG 72709 | || | || || | | | | || | || | | | ||| || || || |||| Sbjct 3720 GTCGAAGTCCTCTTTGTGTCTCATGAC-ACATTCGTATGTCTCCTTAGAGATCATAGGAG 3778 Query 72710 AATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATA 72769 | | ||| || ||||| || ||||||| | | | || || || | || Sbjct 3779 AGGGCTTCATGTTCTTAGGGTTGACATAGTGGTAAAGGTCGCTAATGACAGAAGACCATT 3838 Query 72770 GtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAAT 72829 | || ||||||| |||||| || ||||| ||||| || | ||||| || || ||||||| Sbjct 3839 GCTTCTTTGTTTGCTTGTGGAGGTTTGACACGGCAATACGTGCGGCAAGGATAGCATAAT 3898 Query 72830 CTGGATG 72836 | || || Sbjct 3899 CCGGGTG 3905 Score = 91.5 bits (100), Expect = 2e-13 Identities = 319/495 (64%), Gaps = 5/495 (1%) Strand=Plus/Plus Query 70831 GTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 70890 ||||| |||||||||||||| ||||| ||||| || |||| ||| |||||||| || Sbjct 1891 GTACGGAGATAGTACATGCCAGTTTTCAGACCAAGCTTCCAGCCGGTGAAATGCATGCTG 1950 Query 70891 GTTA-GTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGAT 70949 || | || |||| | || || || ||||| || | || || |||||||| Sbjct 1951 GTAATCTTCCCCATAG-TGGGCTCTCTCATATGAATGTTTAGTGATTGGGATTGATCGAC 2009 Query 70950 GAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGT 71009 ||||| || | ||| || ||||| | | ||| || || | |||||||||| || Sbjct 2010 AAAGGCACCACGGTCAGCGGCCATCTGGACGATGGTTCGCTGAGAGATTTCCCAAACGGT 2069 Query 71010 TTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATC 71066 || |||| || | || | |||| ||||| | |||||||| || ||||| || Sbjct 2070 CTTGTAAAGAGCTTTGAGGTCCGCAGGAATGTTTGGAATGTTCTGAATTGAACCACCTTC 2129 Query 71067 TGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAG 71126 ||||| || | || || || ||| ||| | | || | | | || Sbjct 2130 GGCAATGATGCGGTTCTTCATGCTGTCAGACCAGAGACCCATGTCAACAAGGTCCTTGAG 2189 Query 71127 GAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACT 71186 | ||| ||||| ||||| || || |||| | || | ||||| |||||| || Sbjct 2190 CAACCAAGGGTTAACAACTTGGAACTCGCCAGCAAGGACACGACGAGAGTAAATGTTCGA 2249 Query 71187 GGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCAT 71246 || || || || | | || || || |||| ||| || | ||| ||||| ||||| Sbjct 2250 TGTGTAGGGCTCGAAGCATTCGTTGTTACCCAGAATCTGGGAAGTGCTAGCAGTGGGCAT 2309 Query 71247 AGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTC 71306 ||| || || || | || |||| | ||||||| ||||| || || || | Sbjct 2310 AGGAGCAACTAACAAGCTGTTTCGTACACCATGTTGCTTGATTTGCTCCTTAAGGCTAGC 2369 Query 71307 CCAATTCCAAAGATC 71321 ||||| ||| ||||| Sbjct 2370 CCAATCCCAGAGATC 2384 >seq1257 Length=2089 Score = 111 bits (122), Expect = 2e-19 Identities = 336/510 (66%), Gaps = 23/510 (5%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || ||||| ||||| ||||| || ||||| || || ||||| || | | || || || Sbjct 941 TTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTC 882 Query 41834 TCCATGAAATCAAACGGATTGGTAA--CATTATAAAtttttttAAATCCCAATTCAGAAA 41891 |||||||| || || || |||||| | || | || | | | || | || | Sbjct 881 TCCATGAAGTCGAAGGGGTTGGTAGATCGGTAGACCTTCTCGT---TGCCGAG--AGCGA 827 Query 41892 TCAAT---CTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA 41948 || | | || |||| ||| || || ||| ||||||| | ||||| || | Sbjct 826 CCAGTAGGCGGTCGGCGACGAACTCGATGTATTGCTTCATCAAGTTGGCGTTCATGCCCA 767 Query 41949 TAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTA 42008 || | || |||||| |||| || ||||||||||| || | ||| || ||||| | Sbjct 766 GCAGAGCACAGGGCAGAGCCTCAGTCAGGAATTCTTGTTCGATGGCGACAGCATCTGTGA 707 Query 42009 TAATAGATCTTACTGTTT--CTTCACT--CGGTG-GATACAATAAATGTTTAAACATCAA 42063 | |||||| ||| | | || | ||| | | | | | ||| | || | | Sbjct 706 T----GATCTT-CTGGATGACGTCCTTGCCGGGGCGGTTCTTGAGGTGTGTGAATAGTAG 652 Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 || ||||| || |||||||||||| || | | || | |||||||| || || || Sbjct 651 GCAAGCGAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTAAG 592 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 |||||||| || |||||||| || | ||| || || || || |||| ||| ||||| Sbjct 591 ACCGGGCATCAGACCACGCTTCTTCAACCAGAAAATGGAGGCGAATGCGCCACTGAAGAA 532 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATG 42240 ||| || || || || |||||||||||||| | || || || || ||||| Sbjct 531 GATACCCTCGACAGCAGCAAAGGCAATAAGACGCTGAGCAAAAGTGGAGTTCTTGTCAGA 472 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTT 42270 ||||| | ||||||| ||||||||||| Sbjct 471 GATCCATTGCAGAGCCCAGTCGGCCTTCTT 442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671122891317440