Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq274 244 1e-59 seq1257 140 4e-28 >seq274 Length=11782 Score = 244 bits (270), Expect = 1e-59 Identities = 754/1156 (65%), Gaps = 34/1156 (3%) Strand=Plus/Plus Query 62892 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62951 |||| ||| |||| || || ||||||||||||| | | ||| || | || |||||| Sbjct 2767 GCAAGAGACGCCAAGTTGCAGACGGCTACCTCATCGGGAGCCGAGTACTCGATAATCTCA 2826 Query 62952 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63011 ||||| | ||| || |||||||| | || | ||||| ||||| ||| || Sbjct 2827 GTGCACAAGTTAGAACTACGAATAGTTCCAAGGTTCTTCTGATTGCTCTTGCGGTTGCAG 2886 Query 63012 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63071 |||||| ||||| ||||| ||| | || || || |||||| || | ||| || | | Sbjct 2887 TGATCCTTGTAAAGCATGAAGGGATTCCCGGTCTCGGTCTGAGCCTCCAGAATGGCGTAC 2946 Query 63072 CAGACGACTC-GAGCCTTTA--TTATAG--ATTTGTATCTCCTTTCTCTTTCGTATAGTG 63126 || | | || | ||||| | || | | | | || || ||| | | | | || Sbjct 2947 CATA-GTTTCTGGGCCTTAACCTTCTGGCGACCACGACCTTCTGCCTCATACTTCTCGT- 3004 Query 63127 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGAC 63186 |||| ||| || || || || | |||| | | | || || || ||| || | Sbjct 3005 ---ACAAGGCTTCAAATTCATCACCGTAGACATCGGCAAGACCCGGGCACTCACTAGGGC 3061 Query 63187 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63246 |||| | | |||||| |||| | || || || ||||| || || ||||||||||| | Sbjct 3062 ACATGAGGGTCCACTCGCCGTTCTTCTCAACACGCTTCATGAAAAGGTCAGGAATCCAGA 3121 Query 63247 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63306 |||| | || ||||| | | | ||| || || || ||||| ||| || | Sbjct 3122 GAGCGAGGAAAAGATCGCGAGCACGGACTTCTTCTTTACCATGGTTCTTGCGAAGGTCAA 3181 Query 63307 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63366 ||||| | | | ||| ||||| ||||| | ||||| || | | || |||| | Sbjct 3182 GGAACTCGAAGACATCCTGGTGCCAGGGTTCGAGATATATAGCAAAGGCACCGGGCCTCT 3241 Query 63367 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63426 |||| || ||||| || | |||||| |||||||| || |||||| |||||| || | | Sbjct 3242 TGTTACCACCCTGGTCAACGTATCTGGCGGTGTTGTTGAAAACTCGCAACATGGGCACGA 3301 Query 63427 TACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAA 63486 |||| || || ||||||| ||||||| ||| || ||| | ||||| || | Sbjct 3302 TACCATTAGAGGTACCATTCGTACCGGCGATGTATGAGCCAGTAGCACGGAT----CCGG 3357 Query 63487 TTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63542 | ||| ||||| || || || || | || ||||| | || || || | ||| Sbjct 3358 TGGATGTTGAGACCGATACCTCCAGCTGTCTTGGAGATCATGGCACAGGTCTTGAGTGTG 3417 Query 63543 TCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63602 || ||||||||||| || || || || |||||| || || || ||| | || | | Sbjct 3418 TCGTAGATACCCTCAATACTGTCTTCCTTCATGTCAACTAAGAAGCAGGAGGCCAGCT-G 3476 Query 63603 TGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63661 || | | ||||| ||||| || | || || |||||||| || || |||| || Sbjct 3477 TGCCTGGGGTGTTCCAGCATTGAAAAGAGTGGGGGAAGCGTGGGTGAAATATTTGCTGGA 3536 Query 63662 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT------CCCATTGATGAATTCCTAC 63715 | || ||||| |||| ||| || |||| || |||| ||| || || Sbjct 3537 CATAAGGTTGTAAGTCTGAATGACTTTCTCTACATTATCGCCCCA------AATACCAAC 3590 Query 63716 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAA 63775 || |||||||| | ||||||||| || ||||| || ||||| | || | |||| | Sbjct 3591 AGCCACACGCATGATCATGTGCTGTGGCCTTTCTACAATCTTCTCATTGAGCTTCAGTAG 3650 Query 63776 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 63835 ||| || | ||||| || || || ||||| || | ||| |||||||| ||||| | Sbjct 3651 GTAAGACCTCTCCAAGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGAC 3710 Query 63836 AATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAA 63894 ||| | |||| || | || || | | | | || | || | | | ||| || | Sbjct 3711 AATTGCGGAGTCGAAGTCCTCTTTGTGTCTCATGAC-ACATTCGTATGTCTCCTTAGAGA 3769 Query 63895 TAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTT 63954 | || ||||| | ||| || ||||| || ||||||| | | | || || || Sbjct 3770 TCATAGGAGAGGGCTTCATGTTCTTAGGGTTGACATAGTGGTAAAGGTCGCTAATGACAG 3829 Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 | || | || ||||||| |||||| || ||||| ||||| || | ||||| || | Sbjct 3830 AAGACCATTGCTTCTTTGTTTGCTTGTGGAGGTTTGACACGGCAATACGTGCGGCAAGGA 3889 Query 64015 TGGCATAATCCGGATG 64030 | ||||||||||| || Sbjct 3890 TAGCATAATCCGGGTG 3905 Score = 86.0 bits (94), Expect = 8e-12 Identities = 318/496 (64%), Gaps = 7/496 (1%) Strand=Plus/Plus Query 62025 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62084 ||||| ||||||||||| || ||||| ||||| || |||| ||| |||||||| || Sbjct 1891 GTACGGAGATAGTACATGCCAGTTTTCAGACCAAGCTTCCAGCCGGTGAAATGCATGCTG 1950 Query 62085 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62144 || | || | | || ||| ||||| || || | ||||| |||||||| Sbjct 1951 GTAATCTTCCCCATAGTGGGCTCTCTCATATGAATGTTTAGTGATTGGGATTGATCGACA 2010 Query 62145 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 62204 ||||| || | ||| || ||||| | | ||| || || | |||||||||| || Sbjct 2011 AAGGCACCACGGTCAGCGGCCATCTGGACGATGGTTCGCTGAGAGATTTCCCAAACGGTC 2070 Query 62205 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCT 62261 || |||| || | || | |||| ||||| | |||||||| || ||||| || Sbjct 2071 TTGTAAAGAGCTTTGAGGTCCGCAGGAATGTTTGGAATGTTCTGAATTGAACCACCTTCG 2130 Query 62262 GCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 62321 || || || | ||||| || ||| ||| | | || | | | || Sbjct 2131 GCAATGATGCGGTTCTTCATGCTGTCAGACCAGAGACCCATGTCAACAAGGTCCTTGAGC 2190 Query 62322 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 62381 | || ||||| ||||| || || |||| | || | |||| |||||| || Sbjct 2191 AACCAAGGGTTAACAACTTGGAACTCGCCAGCAAGGACACGACGAGAGTAAATGTTCGAT 2250 Query 62382 GTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 62441 || || || || | | || || || |||| ||| || | ||| ||||| |||||| Sbjct 2251 GTGTAGGGCTCGAAGCATTCGTTGTTACCCAGAATCTGGGAAGTGCTAGCAGTGGGCATA 2310 Query 62442 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTT--CTGATTTTATCTTTTAGAGGTT 62499 || || || || || || |||| | ||| ||||| |||||| || || || Sbjct 2311 GGAGCAACTAACAAGCTGTTTCGTACACC--ATGTTGCTTGATTTGCTCCTTAAGGCTAG 2368 Query 62500 CCCAATTCCAAAGATC 62515 |||||| ||| ||||| Sbjct 2369 CCCAATCCCAGAGATC 2384 >seq1257 Length=2089 Score = 140 bits (154), Expect = 4e-28 Identities = 341/509 (67%), Gaps = 21/509 (4%) Strand=Plus/Minus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || ||||| ||||| ||||| || ||||| || || || || || | | || || || Sbjct 941 TTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTC 882 Query 33073 TCCATGAAATCAAACGGATTGGTAA--CATTATAAAtttttttAAATCCCAATTCAGAAA 33130 |||||||| || || || |||||| | || | || | | | || | || | Sbjct 881 TCCATGAAGTCGAAGGGGTTGGTAGATCGGTAGACCTTCTCGT---TGCCGAG--AGCGA 827 Query 33131 TCAAT---CTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA 33187 || | | || |||||||| || || ||| ||||||| | ||||| || | Sbjct 826 CCAGTAGGCGGTCGGCGACGAACTCGATGTATTGCTTCATCAAGTTGGCGTTCATGCCCA 767 Query 33188 TAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTA 33247 || | || |||||| |||| || ||||||||||| |||| || |||||||| | Sbjct 766 GCAGAGCACAGGGCAGAGCCTCAGTCAGGAATTCTTGTTCGATGGCGACAGCATCTGTGA 707 Query 33248 TAATAGATCTA----ACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAA 33303 | || ||| ||| | ||| | || || | | | ||| | || | | Sbjct 706 TGATCT-TCTGGATGACG--TCCTTGCCGGGGCGGTT-CTTGAGGTGTGTGAATAGTAGG 651 Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| || ||||||||||||||| | | || || |||||||| || || || Sbjct 650 CAAGCGAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTAAGA 591 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| || |||||||| || | ||| || ||||| ||||||| ||| |||||| Sbjct 590 CCGGGCATCAGACCACGCTTCTTCAACCAGAAAATGGAGGCGAATGCGCCACTGAAGAAG 531 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG---CTGTCATGT 33480 || || || || ||||||||||||||||| | || || || || | ||||| Sbjct 530 ATACCCTCGACAGCAGCAAAGGCAATAAGACGCTGAGCAAAAGTGGAGTTCTTGTCAGAG 471 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTT 33509 ||||| | ||||||| ||||||||||| Sbjct 470 ATCCATTGCAGAGCCCAGTCGGCCTTCTT 442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622932062383040