Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq600 116 3e-21 seq1817 113 4e-20 >seq600 Length=9993 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || ||||| | || | ||| |||||| || |||||||| ||| Sbjct 614 CCACCACGTAGGCGGAGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 673 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || ||||||||||| ||| ||||||| ||||| ||||| || ||| Sbjct 674 AGGGTTCGACCATCTTCGAGCTGCTTGCCCGCGAAGATTAATCGCTGTTGGTCGGGGGGG 733 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| || ||| ||||| | || | || ||| | ||||| | Sbjct 734 ATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTATCGATGGTGTCGCTAGACTCCACC 793 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | || ||||| || || || || |||||||||||||||| Sbjct 794 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCATGA 842 >seq1817 Length=26529 Score = 113 bits (124), Expect = 4e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | || |||||||| ||||||||||| ||| Sbjct 16579 CCACCACGGAGACGGAGGACAAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAT 16520 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| ||||||||||| ||| | || || ||||| ||||| |||||| Sbjct 16519 AGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCGGGAGGG 16460 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||| | | || | ||| || | ||||| | Sbjct 16459 ATACCCTCCTTGTCTTGGATCTTCGACTTAACGTTGTCGATAGTGTCCGAAGACTCCACC 16400 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 |||| ||| | ||| || ||||| || || || |||| Sbjct 16399 TCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGA 16363 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || | || | ||| || ||||| || |||||||| ||||| Sbjct 16289 GCCACCACGTAGACGAAGGACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGCT 16230 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| || ||||| || ||| | || || ||||||||||| ||||| Sbjct 16229 CAGAGTGCGACCATCCTCAAGTTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCAGGAGG 16170 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || || || |||| | || | || |||| |||||| | Sbjct 16169 AATGCCTTCCTTATCCTGAATCTTGGATTTGACGTTGTCGATGGTGTCGGAGGACTCCAC 16110 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || ||||| ||||||||| Sbjct 16109 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATG 16061 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | ||||||||||| || |||||||| ||||| Sbjct 17035 CCACCACGGAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTT 16976 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| | |||||| || ||| |||| | || || ||||| || || Sbjct 16975 AGAGTGCGACCATCCTCCAACTGCTTACCAGCGAAGATAAGTCGTTGTTGGTCAGGGGGA 16916 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || || | || || | Sbjct 16915 ATGCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCAATCGTGTCCGATGATTCAACC 16856 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || | || || ||||| |||||||| Sbjct 16855 TCCAGAGTGATCGTCTTTCCTGTCAAGGTCTTGACGAAGATCTGCAT 16809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472001330088960