Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1919 140 2e-28 seq600 86.0 4e-12 seq1279 84.2 1e-11 >seq1919 Length=13974 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1826 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1885 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1886 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1920 >seq600 Length=9993 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || || ||||||||||| || || ||||| || || | || | || || | || Sbjct 638 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCATCTTCGAGCTGC 697 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || || || |||| || ||||| |||| ||||| || || |||||| ||| || Sbjct 698 TTGCCCGCGAAGATTAATCGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGAATCTTC 757 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| ||||| | || || || | | || || || | || ||||| |||||||| Sbjct 758 GACTTGACATTATCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTACCCGTG 817 Query 38295 AAGGTTTTCACGAATATCTGCATGTTT 38321 | ||| || ||||| ||||||||| || Sbjct 818 AGGGTCTTGACGAAAATCTGCATGATT 844 >seq1279 Length=18713 Score = 84.2 bits (92), Expect = 1e-11 Identities = 207/314 (66%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 ||||| |||| |||| | || || ||||| |||||||| ||| | || | Sbjct 17537 AACGTTCGTCGTGATGTCACCGATGCCTTCTATCGCTACAAGATGGAAAGAATTCAGACA 17478 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 ||| | || || || || || ||||| || || ||| ||||||| || |||||| Sbjct 17477 AAGATTGAAGGCAAAGGTAATGGTATCAAGACTGTCGTTGTCAATCTGAGCAGTGTCGCT 17418 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 || | || | ||||| | | || | ||||| ||||| | ||| ||||| ||| Sbjct 17417 CAGTCTCTTGCCCGCCCAGGGTCATATGTCATTAAATACTTCGGTTTCGAGCTTGGTGCT 17358 Query 6354 CAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCC 6413 ||||| | |||| | | || |||| ||| | || || | ||| | | | Sbjct 17357 CAGACCAATATTGACCCTCCCGATGACCGCTGGATCATCAATGGTGCCCATGAAGCCTCT 17298 Query 6414 AAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGAT 6473 |||||||||||| |||||||||||||| ||||||||| || || | | ||| | Sbjct 17297 AAGCTGCAGGACCATCTTGACGGCTTTATCAACAAGTTTGTCCTTTGCAAGAAGTGCAAG 17238 Query 6474 AACCCGGAGACCGA 6487 ||||| ||||| || Sbjct 17237 AACCCTGAGACAGA 17224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334939264263464