Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1119 114 3e-20 seq274 91.5 3e-13 >seq1119 Length=22286 Score = 114 bits (126), Expect = 3e-20 Identities = 100/122 (82%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||| || || ||||||||||| || || ||| |||||| ||||| ||| || Sbjct 19612 CTCACTCGCGTATGCGCGGTCTTTCCGGTGGTCAGCGTGTCAAAGTTGTCCTCGCTGCTT 19553 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 |||| |||||||| |||||| | ||||||||||||||||||||||||||||| ||||| Sbjct 19552 GCTC-GTGGCAACGACCTCACTTAATCGTTCTCGACGAGCCTACCAACTATCTCGACCGT 19494 Query 280821 GA 280822 || Sbjct 19493 GA 19492 >seq274 Length=11782 Score = 91.5 bits (100), Expect = 3e-13 Identities = 179/262 (68%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 293122 TGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGAGATCTCC 293181 |||||||||||||||||||| ||||| || | | | | || | |||||| ||| Sbjct 2002 TGATCGACAAAGGCACCACGGTCAGCGGCCATCTGGACGATGGTTCGCTGAGAGATTTCC 2061 Query 293182 CACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTGGATAGAC 293241 || |||||||| | || |||| || | | ||||| || ||||| || || Sbjct 2062 CAAACGGTCTTGTAAAGAGCTTTGAGGTCCGCAGGAATGTTTGGAATGTTCTGAATTGAA 2121 Query 293242 CCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAGCAATGAG 293300 || || | |||||| || |||||||||| | || ||||| || |||| | ||| || Sbjct 2122 CCACCTTCGGCAATGATGCGGTTCTTCATGCTGTCAGACCAGAGACCCATGT-CAACAAG 2180 Query 293301 CTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACGGCTGTA 293360 || || | ||| ||| ||||| ||||||| ||||| || ||||| ||| Sbjct 2181 GTCCTTGAGCAACCAAGGGTTAACAACTTGGAACTCGCCAGCAAGGACACGACGAGAGTA 2240 Query 293361 AATGTTCGAAGTGATGGGTTCG 293382 ||||||||| ||| ||| ||| Sbjct 2241 AATGTTCGATGTGTAGGGCTCG 2262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027811199154904