Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1817 183 6e-41 seq600 176 8e-39 seq315 154 3e-32 >seq1817 Length=26529 Score = 183 bits (202), Expect = 6e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || || || | |||||||| ||||| ||||| || |||||||| || ||| Sbjct 17036 TCCACCACGGAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 16977 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | ||||| || |||||||| || ||||| || |||| ||||||||| || || Sbjct 16976 TAGAGTGCGACCATCCTCCAACTGCTTACCAGCGAAGATAAGTCGTTGTTGGTCAGGGGG 16917 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||||||||||||||| || ||||| ||||||| || || ||||| | |||||| || Sbjct 16916 AATGCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCAATCGTGTCCGATGATTCAAC 16857 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| ||||| || ||||| || | |||||||||||| ||||||||| Sbjct 16856 CTCCAGAGTGATCGTCTTTCCTGTCAAGGTCTTGACGAAGATCTGCATT 16808 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || ||||| || || |||||||| || ||| Sbjct 16288 CCACCACGTAGACGAAGGACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTC 16229 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| || ||||| || | || || ||||| || ||| Sbjct 16228 AGAGTGCGACCATCCTCAAGTTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCAGGAGGA 16169 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| || |||||||| | |||||| ||||||||||| | || || || Sbjct 16168 ATGCCTTCCTTATCCTGAATCTTGGATTTGACGTTGTCGATGGTGTCGGAGGACTCCACC 16109 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||||||||| |||||||| Sbjct 16108 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 16062 Score = 147 bits (162), Expect = 4e-30 Identities = 152/198 (77%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || ||||| || || ||||| || ||||| || || | ||||| || | Sbjct 16560 CAAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGATAGGGTTCGGCCATCCTCAA 16501 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| |||||||| || | || ||||||||||| || || || ||||||||||| | Sbjct 16500 GCTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCTTGGA 16441 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| | ||| ||| ||||| ||||| | || || || || | ||||||||| |||| Sbjct 16440 TCTTCGACTTAACGTTGTCGATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTTC 16381 Query 68434 CCGTGAGGGTCTTGACGA 68451 | || ||||||||||||| Sbjct 16380 CGGTAAGGGTCTTGACGA 16363 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || || | || | || || || || || || |||||||| || ||| Sbjct 16809 TTCCACCACGTAGTCGGAGAACGAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGC 16750 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 ||| || | || ||||| | |||||| || || || || |||| ||||| ||||| | Sbjct 16749 TGAGAGTTCGGCCGTCTTCCAGCTGCTTACCCGCAAAGATAAGTCGCTGTTGATCGGGGG 16690 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| || |||||||| || ||||| ||| || ||||||||||||| || || | Sbjct 16689 GAATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTATCGATGGTGTCTGACGACTCAA 16630 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || ||||||||||| || || || | ||||| || || |||||||| Sbjct 16629 CCTCTAAGGTGATGGTCTTGCCGGTCAAAGTCTTCACAAAGATCTGCAT 16581 >seq600 Length=9993 Score = 176 bits (194), Expect = 8e-39 Identities = 179/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || ||| ||| || |||||||| || |||||| Sbjct 614 CCACCACGTAGGCGGAGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 673 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| || | || ||||||||||| || Sbjct 674 AGGGTTCGACCATCTTCGAGCTGCTTGCCCGCGAAGATTAATCGCTGTTGGTCGGGGGGG 733 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || || |||||||| |||||||| | |||||| ||||||||||| ||| || || || Sbjct 734 ATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTATCGATGGTGTC-GCTAGACTCCAC 792 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || |||||||||||||||||||| |||||||| || Sbjct 793 CTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCATGAT 843 >seq315 Length=5603 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| || || ||||| || |||||||| || |||||| Sbjct 1075 CCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1134 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | ||||||||||| || Sbjct 1135 AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCGGGGGGG 1194 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 1195 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 1254 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || | ||||||||| || ||||| |||||||| ||||| Sbjct 1255 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921600004575680