Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq274 237 3e-57 seq1257 212 1e-49 >seq274 Length=11782 Score = 237 bits (262), Expect = 3e-57 Identities = 728/1114 (65%), Gaps = 40/1114 (4%) Strand=Plus/Plus Query 244340 CCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCGTCGAGGGC 244398 || ||||| |||| ||||| ||| ||| || ||| | || || | || || || Sbjct 2440 CCTTCGTAAGTCGAGTAGGTACCCTCGACCTTGGCGATCTCCACGGAGGCAGTT-AGAGC 2498 Query 244399 GGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGT--G 244456 || | ||| || |||||||||||| |||||||| | | ||||| ||| || | Sbjct 2499 AGCATGGTAAATAGTCTCGAAGATCTGCTTGTTCAACTGTCTGGCCT--CCGGAGACTCG 2556 Query 244457 AAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGT 244516 || || || | || | |||| ||| || || ||||| || || | ||||| || Sbjct 2557 AATGGCATACGCAGTGCTAGGAAGGTGTCTGCAAGACCCTGAACACCTAGACCGATAGGA 2616 Query 244517 CTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCAC 244575 | ||| ||| ||||| | || || ||||||| |||||||| ||||| | ||||| Sbjct 2617 CGGTGGCGCATGTTGCTGTTGCGTG-CTTCGGGAACGGGGTAGTAGTTGACATCGATAGT 2675 Query 244576 CTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTC 244635 |||| |||||| |||||| | || || ||| |||| || ||||| || Sbjct 2676 TCTGTTCAGGTTGTGGGTGACGACCTGGGTAACTTCGTGCAGCTTTTGGAAGTCATA--- 2732 Query 244636 GTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGG-----CC 244690 || | | | || | | || | || || ||| ||| ||| | || Sbjct 2733 ---GGTACCGTTGGTG-TAGTCA-----ACGAA-----TGACGGCAGCGCAAGAGACGCC 2778 Query 244691 AGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTA 244750 | |||||||||||| ||||| || | | ||||| || |||||| ||||| | |||| Sbjct 2779 AAGTTGCAGACGGCTACCTCATCGGGAGCCGAGTACTCGATAATCTCAGTGCACAAGTTA 2838 Query 244751 CTGCACT--TGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGT 244808 | ||| || || || |||| || |||||| |||| ||||||| ||||||| Sbjct 2839 --GAACTACGAATAGTTCCAAGGTTCTTCTGATTGCTCTTGCGGTTGCAGTGATCCTTGT 2896 Query 244809 AGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCC 244868 | ||||||||||| |||||||||| ||| || | || | | || ||| || | | Sbjct 2897 AAAGCATGAAGGGATTCCCGGTCTCGGTCTGAGCCTCCAGAATGGCGTACCATAGTTTCT 2956 Query 244869 TAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGA 244928 ||||| ||| || |||| | || |||||||| || ||||| ||| || | Sbjct 2957 GGGCCTTAACCTTCTGGCGACCACGACCTTCTGCCTCATACTTCTCGTACAAGGCTTCAA 3016 Query 244929 ACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACT 244988 | || || |||| ||| | || || |||||| ||||||||||| |||||| Sbjct 3017 ATTCATCACCGTAGACATCGGCAAGACCCGGGCACTCACTAGGGCACATGAGGGTCCACT 3076 Query 244989 CGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGT 245048 ||||| | || || | || |||||| ||||| || |||||||| || |||| || | Sbjct 3077 CGCCGTTCTTCTCAACACGCTTCATGAAAAGGTCAGGAATCCAGAGAGCGAGGAAAAGAT 3136 Query 245049 CCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGT 245108 | | | | || || ||| |||||| | || || | || || ||||| | Sbjct 3137 CGCGAGCACGGACTTCTTCTTTACCATGGTTCTTGCGAAGGTCAAGGAACTCGAAGACAT 3196 Query 245109 CGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGT 245168 | ||||||||| || | || | ||| | ||| ||||||| |||||| || ||||||| Sbjct 3197 CCTGGTGCCAGGGTTCGAGATATATAGCAAAGGCACCGGGCCTCTTGTTACCACCCTGGT 3256 Query 245169 CCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGC 245228 | || || || |||||| | |||| | ||||| || || |||||| | Sbjct 3257 CAACGTATCTGGCGGTGTTGTTGAAAACTCGCAACATGGGCACGATACCATTAGAGGTAC 3316 Query 245229 CGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGA---GGTTGCTGATGGACATGCCTA 245285 | || || || |||||| | ||| | | | || ||| | || || | || | Sbjct 3317 CATTCGTACCGGCGATGTATGAGCCAGTAGCACGGATCCGGTGGATGTTG---AGACCGA 3373 Query 245286 GTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCA 245345 || || || ||||||||| | ||| ||| |||||| ||||| || ||||| | Sbjct 3374 TACCTCCAGCTGTCTTGGAGATCATGGCACAGGTCTTGAGTGTGTCGTAGATACCCTCAA 3433 Query 245346 TGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACG 245405 | ||||| |||||||| | | |||||||||| |||||| | || ||| | | | Sbjct 3434 TACTGTCTTCCTTCATGTCAACTAAGAAGCAGGAGGCCAGCTGTGCCTGGGGTGTTCCAG 3493 Query 245406 AGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 ||||| ||||||||| |||||||| || || Sbjct 3494 CATTGAAAAGAGTGGGGGAAGCGTGGGTGAAATA 3527 >seq1257 Length=2089 Score = 212 bits (234), Expect = 1e-49 Identities = 368/523 (70%), Gaps = 23/523 (4%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAAC 42691 |||||||| |||||||| |||||||| || | |||||| | | || | | || Sbjct 430 CCCTGCATTCGCAAGAAGGCCGACTGGGCTCTGCAATGGATCTCT-GACAAGAACTCCAC 488 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 || | || | || | |||||| | || |||||||| ||||||||| ||||| || Sbjct 489 TTTTGCTCAGCGTCTTATTGCCTTTGCTGCTGTCGAGGGTATCTTCTTCAGTGGCGCATT 548 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 ||||||||| |||||| | ||| || ||| | ||||||||| || |||||||| |||| Sbjct 549 CGCCTCCATTTTCTGGTTGAAGAAGCGTGGTCT-GATGCCCGGTCTTACCTTCTCCAACG 607 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 | |||||| | |||||||| ||||| | ||||| || ||||| || ||| | | Sbjct 608 AGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTCGCTTGCCTACTATTC---ACAC 664 Query 42871 ACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGA 42930 |||||| | || ||| ||||| ||| | |||||||| || || || | | Sbjct 665 ACCTCAAGAACCGCCCCGGCAAGGACGTCATCCAGAAGATCATCACAGATGCTGTCGCCA 724 Query 42931 TCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC-GTGTCCCTGGTCGGCATGAACCACGAC 42989 |||| | || ||||| || || | |||||| ||| | ||| | ||||||||| | || Sbjct 725 TCGAACAAGAATTCCTGACTGAGGCTCTGCCCTGTG-CTCTGCTGGGCATGAACGCCAAC 783 Query 42990 CTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAG 43048 | ||| |||| |||||| ||| ||||||||||| || || | | | |||| | Sbjct 784 TTGATGAAGCAA-TACATCGAGTTCGTCGCCGACCGCCTACT------GGTCGCTCTCGG 836 Query 43049 C--CG----CCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGA 43102 | || ||||| | | |||||||||||| |||||||||||||| | | Sbjct 837 CAACGAGAAGGTCTACCGATCTACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGG 896 Query 43103 GGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||||||||| ||||||||||| |||| ||||||||| Sbjct 897 TGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAG 939 Score = 118 bits (130), Expect = 2e-21 Identities = 210/302 (70%), Gaps = 11/302 (4%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGG-CGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCT 42358 |||||| |||||||||||| || || ||| |||||| || || ||||| ||||| Sbjct 36 ATCTGGCAAATGTACAAGAAGCACGAAGCA-TCCTTCTGGACTGCTGAAGAGATCGACCT 94 Query 42359 GGCCAAGGACACGGCCGGCTGGGAGTC---ACTGTCTGAGAACGAAAAGTTTTTCCTCAA 42415 | ||||||| || |||| | ||| ||| |||| ||||| || || Sbjct 95 GTCCAAGGATCTTCACGACTGGAACAACCGACTCAATGATGACGAGAAGTTCTTTGTCTC 154 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| || |||||||| ||||| || |||||||| |||||||||||||| | | Sbjct 155 TCACATTCTTGCCTTCTTTGCCGCGTCGGACGGCATTGTCAATGAGAACCTAGTTGAGCG 214 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| || || ||| | ||||||||| ||||||||||| |||||||| || Sbjct 215 ATTCAGCGGCGAAGTTCAGATCCCTGAGGCGCGATGCTTCTACGGTTTCCAGATCATGAT 274 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| ||| || ||||||| |||| |||||| ||| || Sbjct 275 GGAGAACATCCACTCCGAGACTTACTCC---CTGCTCATTGACACTTACATCAAGGAACC 331 Query 42593 CG 42594 || Sbjct 332 CG 333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944316252557440