Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09-
06] 1,944 sequences; 35,539,942 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1817 127 5e-24
seq600 127 5e-24
seq315 109 1e-18
seq1257 96.9 8e-15
>seq1817
Length=26529
Score = 127 bits (140), Expect = 5e-24
Identities = 168/232 (72%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| || || | ||| ||||| || | ||| ||| || ||||| || ||||
Sbjct 16292 CATG-CCACCACGTAGACGAAGGACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGT 16234
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
|| || ||||| || || || | ||| ||||| ||||| |||| ||||| || |
Sbjct 16233 CGCTCAGAGTGCGACCATCCTCAAGTTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCAG 16174
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
|| || ||||| |||||||| || || | ||| ||||| || || | ||| || |
Sbjct 16173 GAGGAATGCCTTCCTTATCCTGAATCTTGGATTTGACGTTGTCGATGGTGTCGGAGGACT 16114
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || || || ||||| ||||| || || || ||||||||||| ||||||||
Sbjct 16113 CCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 16062
Score = 123 bits (136), Expect = 6e-23
Identities = 168/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|||||||| ||||| | ||| || | || | ||| || || ||||| || ||||||
Sbjct 17038 TGTCCACCACGGAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCG 16979
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
|| ||||| || || || || || || || |||||||| || || ||||| |
Sbjct 16978 CTTAGAGTGCGACCATCCTCCAACTGCTTACCAGCGAAGATAAGTCGTTGTTGGTCAGGG 16919
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTC 288422
|| || ||||| || |||||||| || ||| || ||||| || || | || |||||
Sbjct 16918 GGAATGCCTTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCAATCGTGTCCGATGATTC 16860
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|| || || ||||||||||| || |||| ||||||||||| |||||||||
Sbjct 16859 AACCTCCAGAGTGATCGTCTTTCCTGTCAAGGTCTTGACGAAGATCTGCATT 16808
>seq600
Length=9993
Score = 127 bits (140), Expect = 5e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || || || | ||||| || || ||||| || ||||||| |
Sbjct 614 CCACCACGTAGGCGGAGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 673
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || ||||| | || || || |||||||| | |||||||| |||
Sbjct 674 AGGGTTCGACCATCTTCGAGCTGCTTGCCCGCGAAGATTAATCGCTGTTGGTCGGGGGGG 733
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
||||| || || ||||| || |||| || || || || || | ||||| || || ||
Sbjct 734 ATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTATCGATGGTGTCGCTAGACTCCACC 793
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476
|| || ||||| ||||| || || || ||||||||||| |||||||| ||
Sbjct 794 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCATGAT 843
>seq315
Length=5603
Score = 109 bits (120), Expect = 1e-18
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || || || | || || || ||||| || ||||||| |
Sbjct 1075 CCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1134
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || ||||| || | || ||||| ||||||||||| |||||||| |||
Sbjct 1135 AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCGGGGGGG 1194
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || | || || || || || | ||| || || ||
Sbjct 1195 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 1254
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
||||| ||||| ||||| || ||||| ||||| |||||
Sbjct 1255 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1292
>seq1257
Length=2089
Score = 96.9 bits (106), Expect = 8e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 269112 CGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCT 269171
|||| |||| ||| | ||| ||| | || ||| || || | || ||||| ||| | |
Sbjct 726 CGAACAAGAATTCCTGACTGAGGCTCTGCCCTGTGCTCTGCTGGGCATGAACGCCAACTT 785
Query 269172 CATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAA 269231
||||| ||||| ||||| ||||| || || || | | || ||||| | |||||
Sbjct 786 GATGAAGCAATACATCGAGTTCGTCGCCGACCGCCTACTGGTCGCTCTCGGCAACGAGAA 845
Query 269232 AGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGAC 269291
|| ||| || | || ||||||| ||| ||||| || || || | || |||||
Sbjct 846 GGTCTACCGATCTACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGAC 905
Query 269292 GAACTTCTTCGAAAAGCGTGTCAGCGACTATCA-ACGTCCTGGTGTAATG 269340
||||||||||| ||||||||| | ||||| || | | || ||||| |||
Sbjct 906 CAACTTCTTCGAGAAGCGTGTCGGTGACTACCAGAAGGCC-GGTGTCATG 954
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179625017758032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |