Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1257 107 4e-18 seq1899 84.2 5e-11 >seq1257 Length=2089 Score = 107 bits (118), Expect = 4e-18 Identities = 177/253 (70%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 ||||||||||| || || | | |||| | |||||| | || ||| | || || Sbjct 703 ATCATCACAGATGCTGTCGCCATCGAACAAGAATTCCTGACTGAGGCTCTGCCCTGTGCT 762 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || | ||||||||| | | | ||| || |||||||| ||||| ||||||||| | Sbjct 763 CTGCTGGGCATGAACGCCAACTTGATGAAGCAATACATCGAGTTCGTCGCCGACCGCCTA 822 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 | |||| || || | ||||| || ||| || | |||||||| | ||| |||||| Sbjct 823 CTGGTCGCTCTCGGCAACGAGAAGGTCTACCGATCTACCAACCCCTTCGACTTCATGGAG 882 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA-ACG 243740 ||| || ||| || || || ||||||||||| ||||||||| |||| || || | | Sbjct 883 AACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAGAAG 942 Query 243741 CCCTGGTGTGATG 243753 || ||||| ||| Sbjct 943 GCC-GGTGTCATG 954 >seq1899 Length=42179 Score = 84.2 bits (92), Expect = 5e-11 Identities = 189/283 (67%), Gaps = 2/283 (1%) Strand=Plus/Minus Query 333713 TTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTT 333772 |||||| || ||| || || |||||||||||||| ||| | | ||||||| Sbjct 32910 TTCGGGGCGAACCTTAACAAAGTCGGACAGATTTCCTTTGAAATGACCCAGCTTTTTCCC 32851 Query 333773 AGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACAC 333832 ||| ||||| ||| ||| ||| ||| || | ||| | |||||||| || || Sbjct 32850 AGGCTCGTAGTGGTATATATCGGTTGTTACATTATCCAAGAAGCTAGAGTCGTGAGAAAC 32791 Query 333833 AATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGA 333892 |||| || | || ||| | | | | ||||| | |||||| | ||| | Sbjct 32790 GATCAAGCTAGTAATGTCTGTGTGTGTCTTGAGGTAGTTTTCCAGCCAAGCAATGTTGGC 32731 Query 333893 CACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGC 333952 || ||||| ||||| || |||||||| ||||| | | || || | | |||||| Sbjct 32730 AACGTCGAGATGATTGGTAGGTTCGTCAAGTAGTAGAACATCGGCTTTTTGCAACATTGC 32671 Query 333953 ACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCTG--AAAGAG 333993 || |||||||| || ||||| ||||| ||||||| |||||| Sbjct 32670 TCGAGCAAGAGCCAGCTTCATCTTCCATCCTCCTGACAAAGAG 32628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102852530016400