Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1257 105 7e-18 seq1817 104 2e-17 seq315 98.7 1e-15 seq600 86.0 6e-12 >seq1257 Length=2089 Score = 105 bits (116), Expect = 7e-18 Identities = 338/522 (65%), Gaps = 23/522 (4%) Strand=Plus/Plus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385 || || ||| ||||||| ||||| | ||||| || | |||||| | | | | || Sbjct 427 GTTCCCTGCATTCGCAAGAAGGCCGACTGGGCTCTGCAATGGATCTCTGACAAGAACTCC 486 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 || | || |||| | | ||||| || |||||||| | || || ||| Sbjct 487 ACTTTTGCTCAGCGTCTTATTGCCTTTGCTGCTGTCGAGGGTATCTTCTTCAGTGGCGCA 546 Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505 || ||| |||| || | | || | | || | |||||||| || || ||| |||| Sbjct 547 TTCGCCTCCATTTTCTGGTTGAAGAAGCGTGGTCTGATGCCCGGTCTTACCTTCTCCAAC 606 Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTA------ 52558 ||| | || || || ||||| || |||||||| ||||| || ||||| ||| | Sbjct 607 GAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTCGCTTGCCTACTATTCACACAC 666 Query 52559 --CAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAG 52616 ||||| ||| ||| || |||| |||| || || ||| || Sbjct 667 CTCAAGAACCGCC---CCGGCAA---------GGACGTCATCCAGAAGATCATCACAGAT 714 Query 52617 GCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATG 52676 || || || |||||| | || || | || | || ||||| | |||||||||||| Sbjct 715 GCTGTCGCCATCGAACAAGAATTCCTGACTGAGGCTCTGCCCTGTGCTCTGCTGGGCATG 774 Query 52677 AACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTC 52736 ||||| | | ||| | ||||||||||| || || || || || |||| ||| Sbjct 775 AACGCCAACTTGATGAAGCAATACATCGAGTTCGTCGCCGACCGCCTACTGGTCGCTCTC 834 Query 52737 GGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCT 52795 || || | | ||| || | || ||| || || || || ||| | ||||| || || Sbjct 835 GG-CAACGAGAAGGTCTACCGATCTACCAACCCCTTCGACTTCATGGAGAACATCTCCCT 893 Query 52796 TGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || |||||||||||||| ||||||||||| ||||| || || Sbjct 894 TGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTA 935 >seq1817 Length=26529 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||| | ||| | | | || ||||| || |||||||||||||| | ||| || ||| || Sbjct 16790 AACGAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCTTC 16731 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 || || ||||| | | |||| || |||||||| || || || ||||| || ||||| Sbjct 16730 CAGCTGCTTACCCGCAAAGATAAGTCGCTGTTGATCGGGGGGAATACCCTCCTTGTCCTG 16671 Query 138525 GATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 ||| || || | | || | |||||| | |||||| ||||| | || | || || Sbjct 16670 GATCTTGCTCTTCACATTATCGATGGTGTCTGACGACTCAACCTCTAAGGTGATGGTCTT 16611 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || |||| ||| || ||||| |||||||| Sbjct 16610 GCCGGTCAAAGTCTTCACAAAGATCTGCAT 16581 Score = 102 bits (112), Expect = 8e-17 Identities = 143/197 (73%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || |||||||||||||||| ||| || ||||| ||||| || || | Sbjct 16255 GATTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCATCCTCAAGTTGCTTTCCAGCG 16196 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || | ||||| ||||| ||||| || ||||| || || ||| | || | ||| | Sbjct 16195 AAAATCAATCGCTGCTGGTCAGGAGGAATGCCTTCCTTATCC-TGAATCTTGGATTTGAC 16137 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| | | |||||||| ||||||||||| | || | || || ||||| || || | Sbjct 16136 GTTGT-CGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCT 16078 Query 138599 TTACAAAAATCTGCATG 138615 | || || ||||||||| Sbjct 16077 TGACGAAGATCTGCATG 16061 >seq315 Length=5603 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||||||| || || |||| Sbjct 1108 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCG 1167 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||||||||| || || ||||| || ||||| ||| || || | | Sbjct 1168 AAGATCAGGCGCTGTTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACA 1227 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| ||||||||||||| || | || || || ||||| || || Sbjct 1228 TTG-TCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTT 1286 Query 138600 TACAAA 138605 || || Sbjct 1287 CACGAA 1292 >seq600 Length=9993 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||| | || || || ||||| || || || | | Sbjct 649 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCATCTTCGAGCTGCTTGCCCGCGAA 708 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||||| ||||||||||| || || || || || ||||| ||| | || | || | Sbjct 709 GATTAATCGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCC-TGAATCTTCGACTTGACAT 767 Query 138543 T-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 | || | ||||||| | ||||||||||| | || | || ||||| || || || || | Sbjct 768 TATCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGA 827 Query 138602 CAAAAATCTGCATG 138615 | |||||||||||| Sbjct 828 CGAAAATCTGCATG 841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496250340823680