Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1817 109 5e-19 seq600 102 8e-17 seq315 100 3e-16 >seq1817 Length=26529 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || || ||||| |||| || |||||| ||| || || || |||||| Sbjct 16258 GTGGATTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCATCCTCAAGTTGCTTTCCA 16199 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||||||||||||| || ||||| ||||| ||||| ||| || || ||| Sbjct 16198 GCGAAAATCAATCGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTGGATTTG 16139 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||| | ||| || || | ||| | || ||||| || || || Sbjct 16138 ACGTTG-TCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGT 16080 Query 127096 TTTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 16079 CTTGACGAAGATCTGCATG 16061 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| |||| ||| | || | ||| | ||||| || || || || ||||| |||| Sbjct 16808 TCCACCACGTAGTCGGAGAACGAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGCT 16749 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || || || ||||| || || || |||| | |||||| |||||||| || Sbjct 16748 GAGAGTTCGGCCGTCTTCCAGCTGCTTACCCGCAAAGATAAGTCGCTGTTGATCGGGGGG 16689 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||| | | |||| |||||| | ||| || Sbjct 16688 AATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTATCGATGGTGTCTGACGACTCAAC 16629 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || |||||||||| ||| || ||||| |||||||| Sbjct 16628 CTCTAAGGTGATGGTCTTGCCGGTCAAAGTCTTCACAAAGATCTGCAT 16581 Score = 104 bits (114), Expect = 2e-17 Identities = 136/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || ||||| ||||| ||| | || || ||| || ||||| || || Sbjct 16549 GTAGACTCCTTCTGAATGTTGTAGTCGGATAGGGTTCGGCCATCCTCAAGCTGCTTGCCG 16490 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | ||||||||||| || |||||||| || ||||||||||| ||| ||| ||| Sbjct 16489 GCGAAAATCAATCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCTTGGATCTTCGACTTA 16430 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||||| | ||| || |||| ||| | || || ||||| || || Sbjct 16429 ACGTTG-TCGATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTTCCGGTAAGGGT 16371 Query 127096 TTTTAC 127101 || || Sbjct 16370 CTTGAC 16365 >seq600 Length=9993 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| |||| || | ||| | || | || ||| || || || ||||| ||| Sbjct 611 GCACCACCACGTAGGCGGAGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCG 670 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || ||| ||| || ||||| || || ||| |||| |||||||| || ||||| Sbjct 671 GAGAGGGTTCGACCATCTTCGAGCTGCTTGCCCGCGAAGATTAATCGCTGTTGGTCGGGG 730 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || |||||||||||| || ||| ||||| | |||| |||||| || ||| Sbjct 731 GGGATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTATCGATGGTGTCGCTAGACTCC 790 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || | ||| | || || || || || || || || |||||||||||| Sbjct 791 ACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCATG 841 >seq315 Length=5603 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | |||||||| || || || ||||| ||| Sbjct 1075 CCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1134 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| ||||| ||| |||||| ||||| || ||||| || Sbjct 1135 AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCGGGGGGG 1194 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | |||| |||||| | | ||| || Sbjct 1195 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 1254 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 |||| ||| | || ||||| ||||| || || || || Sbjct 1255 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475489245330560