Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1817 172 1e-37 seq600 138 3e-27 seq315 131 4e-25 >seq1817 Length=26529 Score = 172 bits (190), Expect = 1e-37 Identities = 161/205 (79%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || || ||||| ||| ||||| | ||||| || | ||| Sbjct 17012 GTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTTAGAGTGCGACCATCCTCCAACTG 16953 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||||||||||||||||||||| || ||||||||||| ||||| || || || Sbjct 16952 CTTACCAGCGAAGATAAGTCGTTGTTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTT 16893 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| ||||| |||||||| ||| || || || || | |||||||||||| Sbjct 16892 GCTCTTGACGTTGTCAATCGTGTCCGATGATTCAACCTCCAGAGTGATCGTCTTTCCTGT 16833 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 ||| || || ||||| | |||||| Sbjct 16832 CAAGGTCTTGACGAAGATCTGCATT 16808 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| || || || || ||||| ||| ||||| | ||||| || Sbjct 16270 ACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCATCCTCA 16211 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || ||||| || | ||| || ||||| |||||||||||||| || || ||| Sbjct 16210 AGTTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGA 16151 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||| || |||||||| || ||||| |||||||| | ||||| Sbjct 16150 ATCTTGGATTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTG 16091 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 16090 CCAGTGAGGGTCTTGACGAAGATCTGCAT 16062 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| | ||| || || || || || || || || || ||||| ||| ||||||| Sbjct 16798 AGTCGGAGAACGAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGG 16739 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| ||||||||||| || ||||||||||| ||||| || || ||||| || || Sbjct 16738 CCGTCTTCCAGCTGCTTACCCGCAAAGATAAGTCGCTGTTGATCGGGGGGAATACCCTCC 16679 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| || || || ||| || || || |||||||| || || || || | ||| Sbjct 16678 TTGTCCTGGATCTTGCTCTTCACATTATCGATGGTGTCTGACGACTCAACCTCTAAGGTG 16619 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || |||||||| || || || | ||||| Sbjct 16618 ATGGTCTTGCCGGTCAAAGTCTTCACAAAGATCTGCAT 16581 >seq600 Length=9993 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || ||| ||| || || || ||||| |||| || |||| ||||||||| Sbjct 632 ACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCATCTTCG 691 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | ||| |||||||| || || || || || ||||| ||| Sbjct 692 AGCTGCTTGCCCGCGAAGATTAATCGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGA 751 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || |||||||| | ||||| |||||||| | ||||| Sbjct 752 ATCTTCGACTTGACATTATCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTA 811 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 812 CCCGTGAGGGTCTTGACGAAAATCTGCAT 840 >seq315 Length=5603 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| |||| || |||| || || ||| Sbjct 1093 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCG 1152 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || |||||||| || || || || || ||||| || Sbjct 1153 AGCTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCGGGGGGGATACCCTCCTTGTCCTGG 1212 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || |||||||| ||| ||||| || ||||| | ||||| Sbjct 1213 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTG 1272 Query 195112 CCTGTCAAAGTTTTTACGAA 195131 || |||| || || ||||| Sbjct 1273 CCCGTCAGGGTCTTCACGAA 1292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109453965587048