Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq600 109 4e-19 seq1817 87.8 1e-12 seq315 84.2 1e-11 >seq600 Length=9993 Score = 109 bits (120), Expect = 4e-19 Identities = 146/201 (73%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||| ||||| ||||| || ||| |||| |||| || ||||| || || Sbjct 644 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCATCTTCGAGCTGCTTGCCC 703 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 || || |||| ||| || ||||| | || | ||||||||||| ||||||| ||| Sbjct 704 GCGAAGATTAATCGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGAATCTTCGACTTG 763 Query 34905 ACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 || || ||||||| || | | ||| || || | ||| || || || |||||||| Sbjct 764 AC--AT--TATCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAG 819 Query 34961 AGTCTTCACAAAGATCTGCAT 34981 ||||| || || |||||||| Sbjct 820 GGTCTTGACGAAAATCTGCAT 840 >seq1817 Length=26529 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/197 (71%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || |||| | || |||||||| || || ||||| Sbjct 16772 TTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCTTCCAGCTGCTTACCCGCAAA 16713 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || ||||| || || || | || | ||||||||||| ||||| || || | Sbjct 16712 GATAAGTCGCTGTTGATCGGGGGGAATACCCTCCTTGTCCTGGATCTTGCTCTTCAC--A 16655 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | ||||||| || | |||||| || | ||| ||||| || || || | ||||| Sbjct 16654 T--TATCGATGGTGTCTGACGACTCAACCTCTAAGGTGATGGTCTTGCCGGTCAAAGTCT 16597 Query 34966 TCACAAAGATCTGCATA 34982 ||||||||||||||||| Sbjct 16596 TCACAAAGATCTGCATA 16580 Score = 86.0 bits (94), Expect = 4e-12 Identities = 130/183 (71%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || ||| |||| |||| || ||||| || ||||| || Sbjct 16543 TCCTTCTGAATGTTGTAGTCGGATAGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAAA 16484 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||| || ||||| | || | ||||||||||| |||||| || || Sbjct 16483 ATCAATCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCTTGGATCTTCGACTTAAC---- 16428 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | | ||||| | ||| | ||| || |||| ||| ||||| ||||| || || ||||| Sbjct 16427 GTTGTCGATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTTCCGGTAAGGGTCTT 16368 Query 34967 CAC 34969 || Sbjct 16367 GAC 16365 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || | || |||| || || || ||||| || || Sbjct 16253 TTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCATCCTCAAGTTGCTTTCCAGCGAA 16194 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | ||| |||||||| | || | || ||||| || |||||| ||||||| Sbjct 16193 AATCAATCGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTGGATTTGACGTT 16134 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || || ||| || || | ||| ||||| || || ||||| ||||| || Sbjct 16133 GTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 16074 Query 34970 AAAGATCTGCATATT 34984 ||||||||||| || Sbjct 16073 GAAGATCTGCATGTT 16059 >seq315 Length=5603 Score = 84.2 bits (92), Expect = 1e-11 Identities = 132/187 (71%), Gaps = 8/187 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| |||| | || || ||||| |||||||| || Sbjct 1111 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 1170 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || ||||| | || | ||||||||||| ||||| ||||| || Sbjct 1171 ATCAGGCGCTGTTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGAC--AT 1228 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || | ||| || |||| ||| ||||| || ||||| || ||||| Sbjct 1229 --TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTT 1286 Query 34967 CACAAAG 34973 ||| ||| Sbjct 1287 CACGAAG 1293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324625908618432