Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1592 114 1e-19 seq33 105 5e-17 seq1834 87.8 1e-11 seq1817 86.0 5e-11 >seq1592 Length=100478 Score = 114 bits (126), Expect = 1e-19 Identities = 326/490 (67%), Gaps = 12/490 (2%) Strand=Plus/Plus Query 550053 TTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGG 550112 ||||||| ||||||||||| || |||||| |||| || || || | || | ||||||| Sbjct 66501 TTGAAATCATTGCCAATGACCAGGGTAACCGAACCACACCCTCCTTCGTGGCCTTCACGG 66560 Query 550113 AAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATA 550172 | || || | | || |||||||||| ||||| | || | | || || ||| || | Sbjct 66561 ACACGGAGCGTCTAATTGGTGATGCCGCAAAGAACCAGGTCGCTATGAACCCTCAGAACA 66620 Query 550173 CTATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGCA 550231 | | || || ||||| ||| | ||||| | ||||| | | || | |||||||| Sbjct 66621 CCGTCTTCGACGCTAAGCGTCTGATTGGTCGCAAGTTCTCA-GACCCTGAGGTTCAGGCC 66679 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-C 550290 ||||||||||| | || ||| | | || | ||| || ||| | |||| | | Sbjct 66680 GATATGAAGCACTTCCCCTTCAAGGTCATTGACAAGAATGGCAAGCCTATTGTTGAGGTC 66739 Query 550291 TACTCATGAAGGATCTG-TTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 | | |||| | | || || || | || ||| |||| || |||||||| | | Sbjct 66740 GAGT--ACAAGGGTGAGACCAAGCAGTTCACCCCCGAAGAAATCTCCTCTATGGTCCTCA 66797 Query 550350 TGAAAATGAAACAAACAGC-CAGTGCT--TTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 || ||| | || || ||| || ||| ||| || || | | || || | Sbjct 66798 CCAAGATGCGTGAGACCGCTGAGTCCTACCTTGGTGG-CA--CCGTCAACAACGCTGTCA 66854 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | |||||||| || || || || ||||| || ||||||||||| || || || || | | Sbjct 66855 TCACTGTACCTGCCTACTTCAACGACTCTCAGCGTCAAGCTACCAAGGACGCCGGTCTCA 66914 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 ||||||| || || || || || || ||||| || || || || ||||| | || || | Sbjct 66915 TTGCTGGCCTAAACGTCCTCCGAATCATCAACGAGCCCACAGCCGCTGCCATCGCCTACG 66974 Query 550527 GACTTGATAA 550536 | ||||| || Sbjct 66975 GTCTTGACAA 66984 >seq33 Length=41058 Score = 105 bits (116), Expect = 5e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 |||| | |||| || | || || || || || || || ||||| || ||||||||||| Sbjct 18145 GTTAAGAATGCTGTCGTTACCGTGCCCGCCTACTTCAACGACTCCCAGCGTCAAGCTACC 18086 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 || || ||||| | || ||||| ||||| ||||| ||| || |||| |||||||||||| Sbjct 18085 AAGGACGCTGGCCAGATCGCTGGTCTTAACGTTCTCCGTGTTGTCAACGAACCTACTGCT 18026 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| | || || || ||||| || Sbjct 18025 GCTGCCTTGGCTTACGGTCTTGAGAA 18000 >seq1834 Length=7267 Score = 87.8 bits (96), Expect = 1e-11 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 550004 GATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATT 550063 || || |||||||||||| ||| |||||||| |||| | || || ||||||||| | Sbjct 7045 GACTTGGGAACCACATATTCTTGCGTTGGTGTAATGCAACAAGGCAAGGTTGAAATTCTA 6986 Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACAT 550123 | ||| || ||||| ||| ||| |||||| || || ||| | ||||| || || | Sbjct 6985 GTCAACGACCAAGGAAACCGAATTACTCCTTCATACGTTGCCTTCACAGACGAAGAGCGA 6926 Query 550124 TTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTAT 550176 || ||||| || || || ||| | || || || ||||| | ||||| || Sbjct 6925 TTGGTTGGAGACGCCGCCAAACAACAGGCAGCTTCCAATCCCAGAAATACCAT 6873 >seq1817 Length=26529 Score = 86.0 bits (94), Expect = 5e-11 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGTTCT 563315 ||||| || || || || ||||| ||| || || ||||| || ||| ||||| | Sbjct 16279 AGACGAAGGACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTC-GCTCAGAGTGCG 16221 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||| |||||||| ||||| || ||||| | || ||||| ||||||||||| ||||| Sbjct 16220 ACCATCCTCAAGTTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCAGGAGGAATGCCTTC 16161 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434 ||||| ||||| || ||| || || || || || | | || | || || || | Sbjct 16160 CTTATCCTGAATCTTGGATTTGACGTTGTCGATGGTGTCGGAG-GACTCCACCTCAAGGG 16102 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | || || ||||| || || || ||||| || ||||| Sbjct 16101 TGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 16062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029193192512560