Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1817 91.5 1e-12 >seq1817 Length=26529 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| ||||||||||||||||| ||||| | || || || ||||||||||| |||||||| Sbjct 16217 ATCCTCAAGTTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCAGGAGGAATGCCTTCCTT 16158 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || |||||||| |||||| || || || || | | |||||||| || Sbjct 16157 ATCCTGAATCTTGGATTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGAT 16098 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| ||||| ||||| || || Sbjct 16097 GGTCTTGCCAGTGAGGGTCTTGACGAAGATCTG 16065 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| |||||||| || ||| || || || || || || | ||| || Sbjct 16574 ACGGAGACGGAGGACAAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGATAGGGT 16515 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | ||| ||||| ||||| || || ||||| | || ||||| || ||||| || || Sbjct 16514 TCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCGGGAGGGATACC 16455 Query 480671 TTCCTTGTCTTGAATCTT 480688 ||||||||||| ||||| Sbjct 16454 CTCCTTGTCTTGGATCTT 16437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268095812407712